Sphingomonas hankookensis: PPZ50_00145
Help
Entry
PPZ50_00145 CDS
T08811
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
shan
Sphingomonas hankookensis
Pathway
shan03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PPZ50_00145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shan03400
]
PPZ50_00145
Enzymes [BR:
shan01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
PPZ50_00145
DNA repair and recombination proteins [BR:
shan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PPZ50_00145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
WCP72018
LinkDB
All DBs
Position
22325..23704
Genome browser
AA seq
459 aa
AA seq
DB search
MRVAALAAADDFDGWRDAARSLAAQRVSPAEVVWQVGDLPTDLFGDEAIVAGDAPAPRVP
RAFIDLARTVAMHADPERFALLYAMLTRLIDQPRLIDDKADPAMRRLEEMAKAVRRDIHK
MRAFLRFREVEEEGGTRFVAWFEPEHHIVRHNGRFFVDRFAAMRWSILTPEVSLHWDGET
LSEGPGASKADAPDGDPVEEVWKTYYASIFNPARLKKGAMLKEMPRKYWKNMPETALVPA
LIAGAQAREAAMIETARAAPGGNSEAAWAALRDEAMGCQRCPLWKPATQTVFGEGPVDAD
MMVVGEQPGDQEDLAGRPFVGPAGQMFDRAMAQAGIDRSRVYVTNAVKHFKFEPRGKRRI
HAKPGVGEIDACRWWIEQERGILRPRMTVALGATAARSLTGKTVTISRERGRVLTLADGG
IGWITVHPSYLLRLPDKIQAEEEFARFVEDLKGAAAAMA
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtcgcggcgctggcggcggcggatgatttcgacgggtggcgcgatgccgcccgg
tcgctcgccgcgcagcgcgtgtccccagcggaagtggtgtggcaggtcggtgacctgccc
accgacctgttcggcgacgaggcgatcgtcgccggcgacgcccccgccccccgcgtgccc
cgtgcgttcatcgatctggcgcggacggtggcgatgcacgccgacccggagcgattcgcg
ctgctctatgcgatgctcacccgcctgatcgaccagccccgcctgatcgacgacaaggcc
gatccggcgatgcggcggctggaggagatggccaaggcggtccggcgcgacattcacaag
atgcgcgcctttctgcgctttcgcgaggtcgaggaagagggcggcacccgcttcgtcgcg
tggttcgagccggagcatcatatcgtccgccacaatggccggttcttcgtcgaccggttc
gcggcgatgcgctggtcgatcctgacgcccgaagtgtcgctgcactgggacggcgagacg
ctgtccgaagggcccggtgccagcaaggccgacgcccccgacggcgacccggtcgaggag
gtctggaagacctattacgcgtcgatcttcaatcccgcccggctgaaaaagggcgcgatg
ctgaaggagatgccgcgcaaatattggaagaacatgcccgaaaccgcgctggtcccggcg
ctgatcgcgggggcacaggcacgcgaggcggcgatgatcgagacggcacgagcggctccc
ggtggcaatagcgaggcggcgtgggcggcgctgcgcgacgaggcgatgggctgccagcgc
tgcccgctatggaagccagcgacgcagacggtgttcggcgaggggccggtggatgccgat
atgatggtcgtcggcgaacagccgggcgaccaggaggatctggcggggcgccccttcgtg
ggcccggcggggcagatgttcgaccgggcgatggcccaagccgggatcgatcggtcgcga
gtctatgtcaccaacgcggtcaagcatttcaagttcgagccgcggggcaagcggcgcatc
catgccaagcccggcgtgggcgagatcgatgcctgtcgctggtggatcgaacaggagcgc
ggcattctccgcccgcgcatgacggtggcgctgggcgcgacggcggcgcggtcgctgacc
ggcaagacggtgacgatctcgcgcgagcgcgggcgggtgctgaccttggccgatggcggg
atcggctggatcacggtccatccgagctatttgctgcggctgcccgataaaatccaggca
gaagaagagtttgcacggttcgtcgaggatttgaagggtgcggcggcggcgatggcgtga
DBGET
integrated database retrieval system
