KEGG   Sphingomonas hankookensis: PPZ50_00895
Entry
PPZ50_00895       CDS       T08811                                 
Name
(GenBank) ligase-associated DNA damage response DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
shan  Sphingomonas hankookensis
Brite
KEGG Orthology (KO) [BR:shan00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:shan03400]
    PPZ50_00895
Enzymes [BR:shan01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PPZ50_00895
    5.6.2.6  RNA 3'-5' helicase
     PPZ50_00895
DNA repair and recombination proteins [BR:shan03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    PPZ50_00895
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr DEAD Helicase_C ResIII Cas3-like_C_2
Other DBs
NCBI-ProteinID: WCP72160
LinkDB
Position
188143..190551
AA seq 802 aa
MRDLPAPLADWFAARGWSPRRHQRDMLDVARAGRHALLVAATGAGKTLAGFLPTLTDLIE
RPSEGLHTLYISPLKALAVDVQRNLLTPIAEMDLPIRVETRTGDTPSDRKARQRSKPPHI
LLTTPESLSLLLSYPDADRLFASLRTIVIDEVHAFATDKRGDLLALCLTRLQRHAPTLRR
VALSATVADPDGYRAWLAPHGDIDAVTLVQGEPGADPDIRILLPQDRIPWSGHSGRYAAQ
QVMREIERHRTTIVFCNTRSLAELIFQDLWLANDAQLPIGVHHGSLDREARRKVEAAMAD
GRLRALVATASLDLGVDWGDVDCVIQMGAPKGSSRLLQRIGRANHRLDEVSKALLVPGNR
FEFLEAQAALDAVEAGELDHEIFRPGALDVLAQHLMGCACAEPFAAADMLAEVQGALPYS
ALDADTFDRVLHYIAEGGYALKAYDRFKRLRLGSDGLWTVTKPAFIAQHRLNAGIIVDAP
TLDVRFKNGRRLGTVEEYFASTLSPGDTFFFAGMSLEVEKIELTDLVVRASSKPARIPKY
GGTRMALSTNLADRVRGFLADPSEWSRFPDDVREWLEIQSRRSVLPRPGELLVETFPHDG
RHYMVAYSFEGWNAHQSLGMLITRRMEAMGLNPIGFVSNDYALACYCLEPITDPAALFSP
DILEHEFVDWVQGSALLKRAFREVAVIGGLVERQHPGKRKTGKQVTFSTDLIYDVLRKYE
PGHLLLQAAWEDARARMTDVGRLAKLLETAQARIRHVTLDRVSPLAVPVLVLIGRERVTQ
GSADDALLVEAEALAAEAMALD
NT seq 2409 nt   +upstreamnt  +downstreamnt
gtgcgcgacctccccgccccccttgccgactggttcgccgcacgcggctggtccccgcgc
cgccaccagcgcgacatgctcgacgtcgcccgcgccggccgccacgcgctgctcgtcgcc
gcgaccggtgccggcaagacgctcgccggcttcttgccgacgctcaccgacctgatcgag
cgcccgagcgaaggcctccacaccctctacatctcgccgctgaaggcgctggcggtcgac
gtgcagcgcaacctgctgaccccgatcgccgagatggacctccccatccgcgtcgagacg
cgcaccggcgataccccgtccgaccgcaaggcgcgccagcgcagcaaaccgccacatatc
ctgctgaccacgcccgaatcgctcagcctgttgctgtcctatcccgatgccgaccgattg
ttcgcgtcgctgcgcacgatcgtcatcgacgaagtgcatgccttcgccaccgacaagcgc
ggcgacctgctggcgctgtgcctcacccgcctgcaacgccatgctccgaccctgcgtcgc
gtcgcgctgtcggcgacggtcgctgacccggacggctatcgcgcatggcttgccccccat
ggcgatatcgatgcggtgacgctggtgcagggggagccgggcgccgaccctgacattcgc
atcctgttgccgcaggaccgcatcccctggtcgggccattccggccgctatgctgcgcaa
caggtgatgcgcgaaatcgagcgccaccgtaccaccatcgtcttctgcaacacccgcagc
ctcgccgaactgatcttccaggatttgtggctggcgaacgacgcgcagctgccgatcggc
gtccatcacggcagcctcgaccgcgaggcgcgacgcaaggtcgaggcggcgatggccgac
ggccgcctgcgcgcgctggtcgccaccgccagcctcgacctcggcgtcgactggggcgat
gtcgattgcgtgatccagatgggcgcgcccaaggggtcgtcgcgcctgctccagcgcatc
ggccgcgccaaccaccggctcgacgaggtgtcgaaggcgctgctggtgcccggcaaccgc
ttcgaatttctggaggcgcaggcggcactggatgcagtcgaggccggcgaacttgaccac
gaaatcttccgccccggcgcgttggacgtcctcgcccagcatctgatgggctgcgcctgc
gccgaacccttcgccgccgccgacatgctggcggaggtgcagggcgcgctcccctattcg
gcgctcgacgccgacacgttcgaccgcgtgctgcactatatcgccgagggcggctatgcg
ctcaaagcctatgaccggttcaaacggctgcggctgggcagcgacgggctatggaccgtc
accaagcccgccttcatcgcgcagcatcgcctcaacgctgggatcatcgtcgacgccccg
acgctcgacgtgcggttcaagaacggccggcggctcggcacggtcgaggaatatttcgcc
tccaccctgtcgccgggcgacaccttcttcttcgccggcatgagcctggaagtggagaag
atcgagctgaccgacctcgtcgtccgcgccagcagcaagcccgcgcgcatccccaaatat
ggcggcacgcgcatggcgctgtcgaccaacctcgccgaccgcgtgcgcggcttcctcgcc
gatccatcggaatggtcgcgctttccggacgatgtgcgcgaatggctggaaatccagtcg
cgccgctcggtcctgccgcgtccgggcgaattgctggtcgaaaccttcccgcatgacggg
cggcactatatggtcgcctacagcttcgaaggatggaatgcgcaccagtcgctcggcatg
ctgatcacccggcggatggaggcgatggggctgaacccgatcggtttcgtctcgaacgac
tatgcgctggcctgctattgcctcgaaccgatcaccgaccccgccgcgctgttttcgccc
gacattctcgaacatgaattcgtcgactgggtacaggggtcggcgctgctcaaacgcgcg
ttccgcgaggtcgcggtgatcggtggcctcgtcgagcgccagcatccgggcaagcgcaag
accggcaagcaggtcaccttctcgaccgacctgatctacgacgtgttgcgcaaatacgaa
cccggccacctgctgctgcaggcagcatgggaggacgcccgcgcacggatgaccgatgtc
gggcggctggccaaactgctggagacggcacaggcgcgcattcggcatgtgacgctcgac
cgggtcagcccgcttgccgttccggtgctggtgctgatcgggcgcgagcgcgtgacgcag
ggatcggccgacgacgcgctgctcgtcgaggcggaggcgctggcggcggaggcgatggcg
ctggattag

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