Sphingomonas hankookensis: PPZ50_00900
Help
Entry
PPZ50_00900 CDS
T08811
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
shan
Sphingomonas hankookensis
Brite
KEGG Orthology (KO) [BR:
shan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shan03032
]
PPZ50_00900 (gyrB)
03400 DNA repair and recombination proteins [BR:
shan03400
]
PPZ50_00900 (gyrB)
Enzymes [BR:
shan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
PPZ50_00900 (gyrB)
DNA replication proteins [BR:
shan03032
]
Prokaryotic type
DNA Topoisomerases
PPZ50_00900 (gyrB)
DNA repair and recombination proteins [BR:
shan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PPZ50_00900 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
TcaA_2nd
Motif
Other DBs
NCBI-ProteinID:
WCP72161
LinkDB
All DBs
Position
complement(191003..193471)
Genome browser
AA seq
822 aa
AA seq
DB search
MATNPNQNDYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGH
CDRILITLNADGSVSVEDNGRGIPTGIHSEEGVSAAEVIMTQLHAGGKFENTNDDNAYKV
SGGLHGVGVSVVNALSDFLDLTIWRDGQEHYMRFRRGDAEAPLKVVGPSEKRGTRVTFLP
SAETFKITEFDFDKLEHRFRELAFLNSGVRLVLVDARHEEPREVELYYEGGIAAFVKYLD
RTKNPLMPEPIAINGFRDDVGIDVALEWNDSYYENVLAFTNNIPQRDGGTHMAAFRAALT
RTLNNYADKSGMLKKEKVSLTGDDMREGLTAIVSVKLPDPKFSSQTKDKLVSSEVRQPLE
ALMADKLADYLEENPGNAKAIIQKVIDAAAAREAAKKARELTRRKGAMDIASLPGKLADC
QERDPAKSELFFVEGDSAGGSAKQGRDRHFQAILPLRGKILNVERARFDRMLASREIGTI
ITALGTGIRDDFNIAKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPEIIEAGHLYIAQ
PPLYKATKGRSEVYLKDDNALDEYLVEAGVSAHVLESPAGARSGDDLKALLGHARRMRTL
MRYVPRRYDMGIVEVLALAGVLDPAIGQADRDTRLQDAVSRIGRTDGEAQWTARVTEDGG
LQFQRRWRGVTDTHNIEPAFLLSAEGRKLHALAAEEAASYAGVSKLVSARSAGEAAAEGE
EEAPAVAAKGETLVARPSQLLDAILAAGRKGLSIQRYKGLGEMNAEQLWETTLDPANRSM
LRVAIDQADVADEIFTRLMGDVVEPRRDFIQENALNVANLDV
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgaaccccaatcagaacgactacggcgcagattcgatcaaggtgctcaagggg
ctggacgcggtccgcaagcgccccggcatgtatatcggcgataccgacgacggctccggc
ctgcaccacatggtgttcgaggtcagcgacaatgcgatcgacgaggcgctggccgggcac
tgcgaccgcatcctcatcacgctgaacgccgatggctccgtctcggtcgaggataatggc
cgcgggattccgaccggcatccacagcgaagagggcgtgtcggccgccgaggtcatcatg
acccagctgcacgccggcggcaagttcgagaacaccaacgacgacaatgcgtacaaggtg
tcgggcggcctgcacggcgtcggcgtgtcggtggtgaatgccctttccgactttctcgac
ctgacgatctggcgcgacgggcaggagcattatatgcgcttccgccggggcgatgccgaa
gcgccgctgaaggtcgtcggcccatcggaaaagcgcggcacccgcgtgacgttcctgccc
tcggccgagacgttcaagatcaccgagttcgatttcgacaagctggaacaccgcttccgc
gagctggcgttcctcaattcgggcgtgcggctggtgctggtcgatgcccggcacgaggag
ccgcgcgaggtcgagctctattacgaaggcgggatcgccgcgttcgtgaaatatctcgac
cggaccaagaacccgctgatgcccgagccgatcgccatcaacggcttccgcgacgatgtc
ggcatcgacgtcgcgctggaatggaacgacagctattacgagaacgtcctcgccttcacc
aacaacattccccagcgcgacggcgggacgcacatggcggcgttccgcgccgcgctgacg
cgtacgctcaacaattacgccgacaagtcggggatgctgaagaaggagaaggtctccctc
accggcgacgacatgcgcgaagggttgaccgcgatcgtgtcggtcaagctgcccgatccg
aaattctcgtcgcagaccaaggacaagctggtgtcgtcggaggtccgtcagccgctggaa
gcgctgatggccgacaagctggcagattatctggaggaaaatccgggcaatgcgaaggcg
atcatccagaaggtgatcgacgccgccgccgcgcgcgaggccgcgaagaaggcgcgcgag
ctgacccgccgcaagggcgcgatggacatcgcgtcgctgcccggcaagctggccgattgc
caggaacgcgatcccgccaagtccgaactgttcttcgtcgagggtgactcggccggtggt
tcggccaagcaggggcgcgaccgccattttcaggcgatcctgccgctgcgcggaaaaatt
ctgaacgtcgagcgtgcgcggttcgaccggatgctcgccagccgcgagatcgggacgatc
atcaccgcgctgggcaccggcatccgcgacgatttcaacatcgccaagctgcgctaccac
aagatcgtcatcatgaccgacgccgacgtcgacggcgcgcatatccgtacgctgctgctg
accttcttctatcgccagatgcccgagatcatcgaggcggggcacctctatatcgcccag
ccgccgctgtataaggcgacgaagggccggtcggaagtgtacctcaaggacgacaacgcg
ctcgacgaatatctggtcgaggccggggtcagcgcgcatgtgctggaaagcccggccggt
gcgcgcagcggcgacgacctgaaggcgctgctgggccatgcgcggcggatgcggacgctg
atgcgctatgtcccgcgccgctacgacatgggcatcgtcgaggtgctggcgctggccggc
gtgctggatccggcgatcgggcaggcggatcgcgatacgcggttgcaggacgcggtgtcg
cgcatcggccgcaccgatggcgaggcgcaatggaccgcgcgggtgaccgaggatggcggg
ctgcagttccagcgccgctggcgtggcgtcaccgacacccacaatatcgaaccggcgttc
ctgctgtcggccgaggggcgcaagctccatgcgttggcggcggaggaagcggcgagctat
gccggcgtgtcgaagctggtcagtgcgcgcagtgccggcgaagcggctgccgaaggtgag
gaagaggcgcctgccgttgccgcgaagggcgagacgctggtcgcgcggccgagccagttg
ctcgacgcgatcctggcggccgggcgcaagggcctgtcgatccagcgttacaaggggctg
ggcgagatgaacgccgaacagctgtgggaaaccacgctcgatccggccaaccggtcgatg
ctgcgcgtcgcgatcgaccaggcggacgtggcggacgagatctttacgcggttgatgggc
gatgtcgtcgagccgcggcgggatttcattcaggagaatgcgctgaacgtggcgaatctg
gacgtttga
DBGET
integrated database retrieval system
