Sphingomonas hankookensis: PPZ50_02355
Help
Entry
PPZ50_02355 CDS
T08811
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
shan
Sphingomonas hankookensis
Brite
KEGG Orthology (KO) [BR:
shan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
PPZ50_02355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shan03019
]
PPZ50_02355
03009 Ribosome biogenesis [BR:
shan03009
]
PPZ50_02355
04131 Membrane trafficking [BR:
shan04131
]
PPZ50_02355
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shan04147
]
PPZ50_02355
Messenger RNA biogenesis [BR:
shan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
PPZ50_02355
Ribosome biogenesis [BR:
shan03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
PPZ50_02355
Membrane trafficking [BR:
shan04131
]
SNARE
SNARE associated proteins
Others
PPZ50_02355
Autophagy
Aggrephagy
Other aggrephagy associated proteins
PPZ50_02355
Exosome [BR:
shan04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
PPZ50_02355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
CDC48_N
AAA_lid_3
AAA_16
RuvB_N
CDC48_2
AAA_22
AAA_5
AAA_33
AAA_2
AAA_14
TIP49
IstB_IS21
nSTAND3
RNA_helicase
NPHP3_N
AAA_28
AAA_18
Mg_chelatase
AAA_7
ABC_tran
AAA_24
AAA_30
AAA_3
DUF815
Sigma54_activat
AAA_25
AAA_19
TsaE
AAA_11
AAA_17
Zeta_toxin
Parvo_NS1
AAA_lid_PRS2_C
ATPase
NB-ARC
bpMoxR
SLFN-g3_helicase
PhoH
Viral_helicase1
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
WCP72423
LinkDB
All DBs
Position
474339..476627
Genome browser
AA seq
762 aa
AA seq
DB search
MADSETGGRRLQVANARPEDSGRGIAHLPRSVMALLGVNEGDVVEIVGKKTTPARAIAPY
PEDEGLDIVRIDGLQRANAGVGSGDQVEVRKAESRPASRVVFAPAQQNLRLQGSANALKR
TFFGRPLCQGDIVATTGHQRVDNLSPNVRRYVNAPAFSLQEIRLAVVSATPKGVVHIDES
TEIELRSEYEEPRETRRADVTYDDIGGMGQTIDQLREMVELPLRYPELFQRLGVDPPKGV
LLHGPPGTGKTRLARAVANESDAEFFLINGPEIMGSAYGESEKRLREVFEEATKASPSIV
FIDEIDSIAPKRGQVSGEAEKRLVAQLLTLMDGLESRANIVVIAATNRPEAIDEALRRPG
RFDREIVVGVPDERGRREILGIHTRGMPLDDNVDLGELSRTTYGFVGADLAALTREAAID
SVRRIMPRIDLSAGTIPQDVLDSLSVTRDDFVEALKRVQPSAMREVMVQAPTVRWDDVGG
LDDAQMRLKEGVELPLKSPDSFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREAEANFIA
TKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGLGEPQVTERVVN
TILAEMDGLEELQSVVVIGATNRPNMVDPALLRPGRFDELIYVGVPDRAGRARILGIQTQ
KMPLAADVDLDAIAARTERFTGADLEDVVRRAGLVALRASLDTREVTMAHFEAALADSRA
SVTVAMEEEYRAMSARLKQDAVAIQPIGFIAPGMVEGRGPKG
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagcgaaacaggcggacggcggctacaggtggcgaatgcccggcccgaggat
agcgggcgcggcatcgcccatctcccccgctcggtcatggcgctgctcggtgtcaacgaa
ggcgacgtcgtcgagatcgtcggcaaaaagacgacccccgcacgcgccatcgccccctat
cccgaggacgaaggcctcgatatcgtccgcatcgacgggttgcagcgcgccaatgccggc
gtgggctcgggcgatcaggtcgaggtgcgcaaggccgagtcgcgcccggccagccgggtg
gtcttcgcgcccgcccaacagaatctgcggctgcaagggtcggccaacgcgctcaagcgc
acctttttcgggcggcctttgtgccaaggcgatatcgtcgccaccaccggccaccagcgg
gtcgacaatctgtcgcccaatgtccgccgttatgtgaatgccccagcgttttcgctgcag
gaaatccgcttggccgtcgtctcggccacgcccaagggcgtcgtccatatcgacgaatcg
accgagatcgagctgcggtcggaatatgaggaaccgcgcgagacgcggcgtgccgacgtc
acctatgacgatatcggcggcatgggccagacgatcgaccagctgcgcgagatggtcgaa
ctccccttgcgctatcccgaactgttccagcgccttggcgtcgatccgcccaagggcgtg
ttgctgcacggcccgcccggcaccggcaagacccgcctcgcccgcgcggtcgccaacgaa
tcggacgccgaattcttcctgatcaacggtcccgagatcatgggatcggcctatggcgaa
tcggaaaagcggctgcgcgaggtgttcgaggaggcgaccaaggcatcgccctcgatcgtg
ttcatcgacgagatcgattcgatcgcccccaagcgcggccaggtatcgggcgaggccgaa
aagcggctggtcgcccagctgctgacgctgatggacgggctcgaatcgcgcgccaacatc
gtcgtcatcgctgcgaccaaccggcccgaagcgatcgacgaggcgctgcgccgtccgggc
cggttcgaccgcgagatcgtcgtcggcgttcccgacgagcgcggacggcgcgagatcctc
ggcatccatacccgcggcatgccgctcgacgacaatgtcgatctgggcgagctgtcacgc
accacctacggctttgtcggcgccgatctggcggcgctgacccgcgaggcggcgatcgat
tcggtgcggcggatcatgccgcgcatcgacctgtcggccggcaccatcccgcaggacgtg
ctcgacagcctgtcggtcacccgtgacgatttcgtcgaggcgttgaagcgtgtgcagccc
agcgccatgcgcgaggtgatggtgcaggcgccgaccgtccgctgggacgatgtcggcggg
ctggacgatgcgcagatgcggctgaaggaaggcgtcgaactgccgctcaaatcgcccgac
tcgttccgccgcctcggcatccgcccggccaaggggttcctgctctacggcccgccgggc
accggcaagacgctgctggcgaaggcggtcgcacgcgaggcggaggcgaacttcatcgcc
accaagtcgagcgacctgctgtccaaatggtatggcgagagcgagcagcagatcgcccgc
ctgttcgcccgcgcgcggcaggtggccccgacggtcatcttcatcgacgaactcgattcg
ctggtgcccgcgcgcggcggtggtctcggcgagccgcaggtgaccgaacgggtggtgaac
acgatcctggcggagatggacggactggaggagttgcaatcggtggtggtgatcggcgcg
accaaccggccgaacatggtcgatcccgcgctgttgcgccccggccggttcgacgagctg
atctatgtcggcgtgcccgaccgggcgggacgcgcccgtatcctcggcatccagacgcag
aagatgccgctggcggccgatgtcgacctcgacgccatcgccgcgcggaccgaacgcttt
accggtgccgatctggaggacgtggtgcgacgcgccggcctcgtcgcgctgcgtgcctcg
ctcgacacgcgcgaagtgacgatggcgcatttcgaggcagcgctggcggactcgcgcgcg
tcggtgacggtggcgatggaggaggaatatcgcgccatgtccgcccggctgaaacaggat
gcggtggcgatccagccgatcggcttcatcgcgcccggcatggtcgaggggcgcgggccc
aagggatga
DBGET
integrated database retrieval system
