Sphingomonas hankookensis: PPZ50_02745
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Entry
PPZ50_02745 CDS
T08811
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
shan
Sphingomonas hankookensis
Pathway
shan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPZ50_02745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shan03019
]
PPZ50_02745
03009 Ribosome biogenesis [BR:
shan03009
]
PPZ50_02745
Enzymes [BR:
shan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PPZ50_02745
Messenger RNA biogenesis [BR:
shan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PPZ50_02745
Ribosome biogenesis [BR:
shan03009
]
Prokaryotic type
rRNA processing factors
PPZ50_02745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF6406
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
WCP73562
LinkDB
All DBs
Position
complement(550236..552923)
Genome browser
AA seq
895 aa
AA seq
DB search
MLIDARHREETRVAVVKGNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFVDYGGN
RHGFLAFSEIHPDYYQIPKEDRDALLAEEAAHAAEEAALRAGDHDDDLDYDDHDEDAEGG
VEVVERDEEDDEHHDEEDGEAPAPRKRKNGGDDAAVEALRQRRLNLRRRYKIQDVIRRRQ
VLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTAHGGGISRKISSAADRKRLKSIMAE
LTLPASMGCIVRTAGLQRSRQEIKRDFDYLARLWDGIREQTLTSSAPALVYGDSDLIKRA
IRDIYNKDIDEVIVEGEDGFRHAKDYMRLLMPAHARRVKQYADAVPLFQRAHVEDQLAAM
YNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAQEIARQLRLRD
MAGLVVIDFIDMDHGSNVRKVEKAMKEALKNDRARIQVGRISAFGLMEMSRQRLRTGVLE
ASTRQCPHCEGTGLVRTASSAGLSALRLIEDEAARGRGSLIVLRASQEAAFYVLNKKRAD
IAEVEDRYGVTVEIVPDAEIEGARMAVEASGPPPAHPPKVEPLVVIDDEDDAYEDIEDEI
DDEVEEDAVEEVARTPRGDDEGEGRGKRRRRRRGRRGRNREEGEAGDDADTAEDADDAAD
EAGDDEVEASTDTAPEAEQADEGTRRKRRRRGRRGGRRGEGAFDAADGAGAVADLPIEDD
ASEDVAEAAPEPVAEPEVVEAAPAPAPKRTRRRPSARAKVGDVTEAAPAEPEVVEAGDAA
PIVTPEPVETPKVDAEPVADAPKPKRTRKRKADVDAEVEAPAPAPAEPEAEAEAAPKKRR
APRRKAAAPAEAPAEEAAPVVEAPAAPVEEVQAEEPAADASASPRRGWWQRTFGN
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atgttgatcgacgctcgccaccgggaggaaacccgggtcgccgtcgtcaagggtaaccgg
atcgaggaattcgatttcgaatcggccgagcgcaagcagctcaagggcaatatctatctg
gccaaggtgacgcgggtcgaaccgtcgttgcaggcggcgttcgtagattatggcggcaac
cgccacggcttcctcgctttcagcgaaatccaccccgactattaccagattcctaaggaa
gatcgcgacgcgctgctggccgaggaagccgcgcatgccgccgaggaagcggcgctgcgc
gcgggcgaccatgacgacgacctcgattacgacgatcacgacgaggatgccgaaggcggc
gtcgaagtcgtcgagcgcgacgaggaagacgacgagcatcacgacgaagaggatggcgag
gctccggccccgcgcaagcgcaagaatggcggcgacgatgccgccgtggaagcgctgcgc
cagcgccggctgaacctgcgtcgccgctacaagatccaggacgtcattcgccggcggcag
gtgctgctggtgcaggtcgtcaaggaagagcgcggcaacaagggtgcggcgctgacgacc
tatctgtcgcttgccggccgctattgcgtgctgatgcccaacaccgcgcatggcggcggc
atttcgcgcaagatcagctcggccgccgaccgcaagcggttgaagtcgatcatggccgaa
ctgacgctgccggcgtcaatgggctgcatcgtccgcaccgccgggctccagcgctcgcgt
caggagatcaagcgcgacttcgattacctcgcccgcctgtgggacgggattcgcgaacag
acgctgacctcgtcggcgcccgcgctcgtctatggcgacagcgacctgatcaagagggcg
atccgcgatatctacaacaaggatatcgacgaggtgatcgtcgagggcgaggacggcttc
cgccacgccaaggactatatgcggttgctgatgccggcgcatgcccgccgggtgaagcaa
tatgccgatgccgtgccgctgttccagcgtgcgcatgtcgaggatcagctggccgcgatg
tacaatccggtcgtgcagctgaagtcgggcggctatctggtcatcaacccgaccgaggct
ttggtgtcgatcgacatcaactcagggaggtcgacccgcgaacataatatcgaacagacc
gcgaccgcgacgaacctcgaagcggcgcaggaaatcgcccgccagctgcgcctgcgcgac
atggccggtctcgtcgtgatcgacttcatcgacatggaccacggatcgaacgtccgtaag
gtcgagaaggcgatgaaggaggcgctgaagaacgatcgcgcacgcatccaggtcggccgc
atctccgccttcggcctgatggaaatgagccggcagcggctgcgcaccggcgtgcttgag
gcatcgacccgccagtgcccgcattgcgagggcaccgggctggtccgcaccgcatcgtcg
gcgggcctgtcggcgctgcgtctgatcgaggacgaagcggcgcgtggtcgcggctcgctg
atcgtgctgcgcgccagccaggaagcggccttctatgtcctgaacaagaagcgcgccgac
atcgccgaggtcgaggaccgctatggcgtgaccgtcgagatcgtgcccgatgccgagatc
gagggcgcacgcatggcggtcgaagcctccggcccgccgcccgcgcatccgccgaaggtc
gagccgctggtcgtcatcgacgacgaggacgatgcctatgaggacatcgaggacgagatc
gacgacgaggtcgaggaggacgccgtcgaggaagtcgcccgtaccccgcgcggcgacgac
gaaggtgaaggacgcggcaagcgccgtcgccgccggcgcggtcgtcgcggtcgcaatcgg
gaggaaggcgaagccggcgacgacgccgacacggccgaagacgcggacgatgccgcggat
gaagctggcgacgacgaggtcgaggcatcgaccgacaccgctcccgaagccgaacaggcc
gatgaaggcacccggcgcaagcgtcgccggcgcggccgtcggggcggtcgccgcggcgag
ggtgcgttcgacgcggccgatggtgccggcgccgttgccgacctgccgatcgaggacgat
gcgagcgaggacgtcgccgaagccgcgcccgagccggtcgccgaaccggaggtcgtcgag
gcggcccctgcccctgcgcccaagcgtacccgccgccgcccgagcgcccgcgcgaaggtc
ggcgacgtgaccgaggcggcgccggccgagccggaggtcgtcgaggcgggggatgccgcg
ccgatcgtcacccccgaaccggtcgaaacgccgaaggtcgatgccgagccggtcgccgac
gcgcccaagccgaagcggacccgcaagcgcaaggcggacgtggacgccgaggtcgaggcc
cctgcccccgccccggcagaaccggaagcggaagcggaagccgcgcccaagaagcgccgt
gcgccgcgtcgcaaggcggccgctccggcagaagcgccggccgaggaagccgcgcccgtc
gtggaagcgccggcagcgcctgtcgaagaggtccaggccgaggagcctgccgctgacgct
tcggcatcgccgcgtcgcggctggtggcagcgcaccttcggcaactga
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