Sphingomonas hankookensis: PPZ50_04095
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Entry
PPZ50_04095 CDS
T08811
Name
(GenBank) helicase-related protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
shan
Sphingomonas hankookensis
Pathway
shan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PPZ50_04095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shan03400
]
PPZ50_04095
Enzymes [BR:
shan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPZ50_04095
DNA repair and recombination proteins [BR:
shan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PPZ50_04095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
MFD_D3
SecA_DEAD
AAA_30
RecG_dom3_C
AAA_25
DUF6758
Motif
Other DBs
NCBI-ProteinID:
WCP72742
LinkDB
All DBs
Position
848941..852087
Genome browser
AA seq
1048 aa
AA seq
DB search
MSNASAPDPSDNKPRRVPIGPLAAALASKVEAASLLFIASDEVRAAALADVLAAFAPDAT
VVHLPASDALPGDDAPASPGNAGARVAALRRLRIAHGEGRAVACMTTPEATALRIAAPTD
FDAAPPVLRVGEAIDLSDMAARVEELGYVRDDRVDEPGEVAVRGSVIDIFPADAEQPIRV
TVEEDRIASIRSYDPVTQRGHAELGEVTIGRAAEPPVGKGATLLDHLPGAAVAMDGDAAG
RRERFLDLAQDATRRRRRDAASLVDSASWDALLGERERIALPEAVAEPPRFVTARAPARA
FGKFARQVLEEQRLVLAGSPRDLRFLRKKLAKLARTEPVTITSWDEAVAAKPGTAMLLTA
PLDRGFVIDGVTVVTGGDLLGGRARGDELAGAGANPLFAEAGELRIGDVIVHEDFGIGCI
AGLEQLPGEAAGDAIVLTYAKAARRLVPVMEADRIWRYGADGDAVTLDALDGASWQKRRG
AIDTAIADSARELAAIAATRDQQRVAPIEVDIAAYERFAAGFPFTETPDQARAIAAARAD
LAAGRPMDRLVIGDVGYGKTEVALRAAAIVALSGRQVAIAAPTTVLVRQHVETFRRRFEG
TGIEVAGLSRLSDAAEKKRVKAGLADGSIGVVVGTQAVAGKGVTYHDLALTVIDEEQRFG
AKDKARLREMADHVMTLSATPIPRTLQSALIGLQQLSVLATPPARRQPIRTAVAAFDEVT
VRTALLRERSRGGQSFVVVPRIEDIAPLEERLRKLVPDLDLIVAHGKMPAAEIDAAMVGF
AEGEGDVLLATNIIEAGLDVPRANTMIVHHADRFGLSQLHQLRGRVGRGGRRGQILLLTD
PDQSIADATLKRLRTLQAFDRLGAGFAISARDLDLRGAGDLVGEAQAGHMKLIGIDLYQY
LLGRALRAERGENVDRVVPELHVGIAGRLPEHWIPEAEVRLMLYGRLARIEEEGALDAFE
EELEDRFGALPDEARLLIELARVRLLARGAGVAKVDAGPAAIALTPQHRGDAPEGLTEKN
GRWIMAARIDDAEERLTKVGEVLEAVAA
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgcctctgcccccgatccgtccgacaacaagccgcggcgggtgccgatcggt
cccctcgccgccgcgctggccagcaaggtcgaggcagcgtcgctgctgttcatcgcatcg
gacgaggtgcgcgcggcggcgctggcggacgtgctggcggctttcgcgcccgatgcaacg
gtcgtgcacctgccggcaagcgacgccctgcccggggacgatgcgccggcatcgcccggc
aatgccggcgcgcgggtcgcggcgctccgccggctgcggatcgcgcatggcgagggccgc
gcggtagcgtgcatgactacgccggaggcaacggcgttgcgcatcgctgcgcccaccgat
ttcgatgccgcgccgccggtcttacgcgtcggcgaggcgatcgacctgtccgacatggcc
gcgcgggtggaggaactggggtatgtccgcgacgaccgggtcgacgaaccgggcgaggtc
gcggtgcgcggcagcgtgatcgacatttttcccgccgatgccgaacagccgatccgcgtc
acggtggaggaggatcgcatcgcatcgatccgcagctatgatccggtgacccagcgcggg
catgccgagctgggcgaggtcaccatcggtcgtgcggccgaaccgccggtggggaagggc
gcaacgctgctcgaccacctgccgggtgccgcggtggcgatggatggcgatgccgccgga
cggcgcgagcgcttcctcgaccttgcacaggacgccacccgccgtcgtcgtcgcgatgcc
gcatcgctggtcgatagcgcgagctgggatgcgctgctcggtgagcgggagcggatcgca
ttgcccgaagcggtggctgaaccccctcgcttcgtcaccgcccgtgcccctgcgcgtgcg
ttcggcaagttcgctcgccaagtactggaggaacagcggctcgtgttggcgggcagcccg
cgcgacctgcggttcctgcgcaagaagctggcgaagctcgcccggaccgaaccggtgacg
attacgtcgtgggatgaagcggtagcggccaagcccggcaccgcgatgctgctgaccgcg
ccgctcgatcgcgggttcgtgatcgacggcgtgaccgtagtgacgggcggcgacctgctg
ggcggacgcgcgcgcggcgacgaacttgccggtgccggcgccaatccgctgtttgccgag
gcgggcgaactgcgcatcggcgacgtgatcgtgcatgaggatttcggcatcggctgcatc
gccgggctggagcagctgccgggtgaggcggcgggcgacgccatcgtgctgacctatgcc
aaggccgcgcggcggctggtgccggtgatggaggccgaccgtatctggcgctatggcgcg
gacggcgatgcggtgacgctcgatgcgctggacggggcgagctggcagaagcggcgcggg
gcgatcgacaccgccatcgccgacagcgcgcgcgaactggcggccattgccgcgacacgg
gaccagcagcgggtcgcaccgatcgaggtcgacatcgccgcctatgaacgcttcgccgcc
ggatttccctttaccgaaacccccgatcaggcgcgcgccatcgccgccgcccgcgccgat
ctggccgccggtcgcccgatggaccggctggtcatcggcgatgtcggctatggcaagacc
gaggtggcgctgcgcgccgcagcgatcgtcgccttgtccgggcggcaggtcgcgattgcc
gcgccgacaacggtgctggtccgccagcatgtcgaaaccttccgccgccgattcgagggc
acggggatcgaggttgccggcctgtcgcgtctgtccgatgcggcggaaaagaaacgggtg
aaggccggcctggccgacggatcgatcggtgtggtcgtcggtacgcaggcggtggccggc
aagggtgtcacctatcacgacctcgccctcaccgtcatcgacgaggaacagcgattcggt
gcgaaggacaaggcgcgcctacgcgagatggccgaccatgtgatgacattgtcggcgacg
ccgatcccccgcacgctgcaaagcgcgttgatcggcctgcagcaattgtcggtcctcgcg
accccgccggcccgccgccagccgattcgtaccgccgtcgccgcgttcgacgaggtgacg
gtgcgcaccgcgctgctgcgcgaacgctcgcgtggcgggcagagcttcgtcgtggtgccc
cggatcgaggatattgccccgctggaggaacggctgcgcaagctggtccccgacctcgac
ctgatcgtcgcccatggcaagatgccggcggcggagatcgacgcggcgatggtcggcttt
gccgagggcgagggcgacgtgctgctggcgaccaacattatcgaggcggggctggacgtg
ccgcgcgccaacacgatgatcgtccaccatgccgaccgcttcggcctgtcgcagctccac
cagctgcgcgggcgggtcgggcgcggcgggcggcgcgggcagatattgctgctgaccgat
ccggaccagtcgatcgcggacgccaccctgaaacgactccgcaccttgcaggcgttcgac
cggctgggcgcgggctttgccatcagcgcgcgcgacctcgacctgcgcggcgcgggcgac
ctggtgggtgaggcgcaggccgggcacatgaagctgatcggcatcgacctgtaccaatat
ctgctcggccgcgcgctccgggccgaacgcggcgagaatgtcgaccgggtcgtgcctgaa
ctccatgtcgggatcgccggtcgcctgccggagcattggatacccgaggccgaagtgcgg
ctgatgctctatggccggctggcgcggatcgaggaggaaggtgcgctcgatgcgttcgaa
gaagagttggaggaccggttcggtgcgctgcccgacgaggcgcggctgctgatcgaactg
gcccgcgtccgcctgctggcgcgaggggcgggcgtggcgaaggtcgatgccggccccgcg
gcgatcgcactgaccccgcagcatcgcggggacgcgcccgaggggctgaccgagaagaac
ggtcgctggatcatggccgcgcggatcgacgatgcggaggaacggctgaccaaggtcggt
gaggtattggaggcggtggcggcataa
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