Sphingomonas hankookensis: PPZ50_06055
Help
Entry
PPZ50_06055 CDS
T08811
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
shan
Sphingomonas hankookensis
Pathway
shan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PPZ50_06055 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shan03021
]
PPZ50_06055 (rpoC)
03400 DNA repair and recombination proteins [BR:
shan03400
]
PPZ50_06055 (rpoC)
Enzymes [BR:
shan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PPZ50_06055 (rpoC)
Transcription machinery [BR:
shan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PPZ50_06055 (rpoC)
DNA repair and recombination proteins [BR:
shan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PPZ50_06055 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
WCP73100
LinkDB
All DBs
Position
complement(1265532..1269812)
Genome browser
AA seq
1426 aa
AA seq
DB search
MNELTNFANPVAKPETFDQIQIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVIEPGLTALEKYQLLTEDELLDAQDQYGEDAFSAG
IGAEAVKQMLIDLDLEGEKRDLLEELAVTKSELKPKKIIKRLKVVESFLESGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMEKTGEPGEGMLLGDMAEVHQALHA
GAVTLHTKIVSRVPQTDENGQQYLKRYETTPGRMLLGECLPKSHKVPFDTVNRLLTKKDV
GDVIDEVYRHTGQKETVLFADAIMALGFRHAFRAGISFGKDDMLIAPDKDKLVDETRDQV
KDFEQQYQDGLITQQEKYNKVIDAWSRCGDQVATSMMDEIKAVRRYEEGPMKGREKPINS
IYMMAHSGARGSQAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARK
GLADTALKTANSGYLTRRLVDVSQDCVVIMDDCGTQRALEMRSIIEGGATIASLGERILG
RTTAEDVVDPKTGEVVFPTGTLLDEAMVAKIEAMGLQAMKIRSPLVCEAKVGVCGTCYGR
DLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEAPVDGTVEFRD
LRLIEDQRGRRVVLSRSGEIAIVDMDGRDLSVHRIPYGAYVLFDDGHIVSQGDRMAEWDP
FTAPVITETAGTVKFIDLIENKTVTERVDEATGIAQREIIEYRATSKSKEDLRPRMTLLD
ANSGEAARYMLAPGAVLSVEDGAQVQAGDVLARVARESAKTRDITGGLPRVAELFEARIP
KEAAIIAKVSGRVVFGKDYKAKRKIGIQPEDGGEVVEYLIPKSKVIDVQEGDYVKRGDNL
IGGSPNPHDILETLGIEPLAEYLVSEIQGVYRLQGVKINDKHIETIVRQMLQKVEITDGG
DTTLLAGEQLDRDEMDEANAKLAPGLAPAQGKPVLLGITKASLQTRSFISAASFQETTRV
LTEASVQGKIDSLNGLKENVIVGRLIPAGTGAGMNRLRVAASSRDAALRAQQRALAGFIA
PNSAEEEHAAELARSPRDGQGVSDPLADVVPSGTGTDADAGEYLND
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaatttcgcgaacccggtggccaaaccggagaccttcgaccagatc
cagatcggcatcgcctcgccggagcgcatccgctcgtggtcgttcggcgagatcaagaag
cctgagacgatcaactatcgcacgttcaagccggaacgtgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggattacgaatgcctgtgcggcaagtacaagcgcatgaagtac
aagggcatcgtctgcgaaaagtgcggtgtcgaagtcacggtgtcgaaggtccgccgtgag
cggatgggccatatcgaactggccgccccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctgctgctcgacatgcagctcaagcagctcgagcgcgtgctgtac
ttcgaatcgtacatcgtgatcgagccgggcctgaccgcgctggaaaagtatcagctcctc
accgaggacgaactgctcgacgcgcaggaccagtatggcgaggacgcgttctcggccggg
atcggcgccgaagcggtcaagcagatgctgatcgacctcgacctcgagggtgaaaagcgg
gacctgctcgaagagctggccgtcaccaagtcggaactgaagcccaagaagatcatcaag
cggctgaaggtcgttgagagcttcctggaatcgggcaaccgtcccgaatggatgatcctc
gacgtcgtgccggtcattccgcccgaactgcgtccgctggtgccgctcgacggcggccgc
ttcgcgacgtcggacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctg
aagcggctgatggaactgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgttg
caggaagcggtcgacgcgctgttcgacaacggccgtcgcggccgcacgatcaccggcgcc
aacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggtcgttcggtcatcgtgaccggcccg
gaactcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccg
ttcatctacgcgcgtctggacgccaagggtctgtcgatgaccctgaagcaggccaagaag
tgggtcgagaaggaacgcaaggaagtctgggacatcctcgacgaagtcattcgcgagcac
ccggtcatgctgaaccgcgcgccgacgctgcaccgtctgggcatccaggcgttcgagccg
gtgctgatcgagggcaaggcgatccagctgcacccgctggtctgctcggcgttcaacgcc
gacttcgacggcgaccagatggccgtgcacgttccgctgtcgctcgaagcgcagctggaa
gcgcgcgtcctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcaagccgatc
atcgtgccgtcgcaggacatggtgctgggtctctactatctgtcgatggaaaagaccggc
gagccgggcgaaggcatgctgctgggcgacatggcggaggtgcatcaggcactgcacgcc
ggcgccgtcacgctgcacaccaagatcgtcagccgcgttccgcaaaccgacgagaatggt
cagcagtatctcaagcgctatgagaccaccccgggtcgcatgttgctgggcgaatgcctg
ccgaagtcgcacaaggtgccgttcgacacggtcaaccgcctgctgaccaagaaggacgtc
ggcgacgtcatcgacgaggtgtatcgccacaccggtcagaaggagaccgtgctgttcgcc
gacgcgatcatggcgctgggcttccgccacgcgttccgtgccggcatctcgttcggcaag
gacgacatgctgatcgcgccggacaaggacaagctggtcgacgagacccgcgatcaggtg
aaggacttcgagcagcagtatcaggacggcctgatcacgcagcaggaaaagtacaacaag
gtgatcgacgcctggagccgttgcggcgatcaggtcgcgaccagcatgatggacgaaatc
aaggcggtccgccgctacgaggaaggtccgatgaagggtcgcgagaagccgatcaactcg
atctacatgatggcccactcgggtgcccgcggttcgcaggcgcagatcaagcagctggcc
ggcatgcgcgggctgatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcg
aacttcaaggaaggcctgaccgtccttgaatatttcaactcgacccacggcgcccgcaag
ggccttgcggatacggcgctcaagacggcgaactcgggttacctgacccgccgtctcgtc
gacgtgtcgcaggactgcgtcgtcatcatggacgattgcggtacccagcgtgcgctcgaa
atgcgctcgatcatcgaaggcggcgcgaccatcgcgtcgctcggcgaacgcatcctcggc
cggaccacggcagaggacgtggtcgatccgaagaccggcgaagtcgtgttcccgaccgga
acgctgctcgacgaagccatggtcgcgaagatcgaggcgatgggccttcaggcgatgaag
attcgcagcccgctggtctgcgaagccaaggtcggcgtctgcggcacctgctacggccgc
gacctcgcccgcggtacgccggtgaacatcggcgaagcggtcggcgtcatcgcggcgcag
tcgatcggtgagccgggcacgcagctgacgatgcgtaccttccacatcggtggtgcggca
cagctgaacgaacagtcgaacctcgaagcgccggtcgacggcacggtcgagttccgcgac
ctgcgcctgatcgaggatcagcgcgggcgccgggtggtgctcagccgttcgggtgagatc
gcgatcgtcgacatggacggccgcgacctgtcggtccaccgcatcccctatggtgcgtat
gtgctgttcgacgatggtcacatcgtttcgcagggcgaccgcatggcggaatgggacccg
ttcaccgccccggtcatcaccgaaaccgccggtaccgtgaagttcatcgacctgatcgag
aacaagacggtcaccgagcgcgtcgacgaagcgaccggtatcgcccagcgcgagatcatc
gaatatcgcgcgacgtcgaagtcgaaggaggatctgcgtccgcgcatgaccctgctcgac
gcgaattcgggcgaggccgcgcgctacatgctggcgccgggcgcggtgctgtcggtcgag
gacggtgcacaggtacaggcgggtgacgttctcgcccgtgtcgcccgtgaatcggccaag
acccgcgacatcaccggcggtttgccgcgcgtcgccgagctgttcgaggcgcgcatcccg
aaggaggcggcgatcatcgccaaggtttcgggccgcgtcgtgttcggcaaggattacaag
gcgaagcgcaagatcggcatccagcccgaggatggcggcgaggtcgtcgagtatctgatc
ccgaagtcgaaggtgatcgacgttcaggaaggcgattacgtcaagcgcggcgacaacctg
atcgggggttcgccgaacccgcacgacattctggaaacgctcggcatcgagccgctggcc
gaatatctcgtcagcgaaatccagggcgtctaccggttgcagggcgtgaagatcaacgac
aagcacatcgagacgatcgttcgtcagatgctgcagaaggtcgagatcaccgacggtggc
gacaccaccctgctcgccggcgaacagctcgaccgtgacgagatggacgaagccaatgca
aagctcgcgccgggtctggccccggcacagggcaagccggtgctgctcggcatcaccaag
gcgtcgctgcagacccgcagcttcatctcggccgcatcgttccaggaaacgacccgcgtc
ctcaccgaagcatcggtgcagggcaagatcgacagcctgaacggtctgaaggaaaacgtc
atcgtcggccgcctgatcccggcgggcaccggtgccggcatgaaccgcctgcgcgtcgcg
gcctcgtcgcgcgatgcggcactgcgtgcccagcagcgggcgctggcgggcttcatcgcg
ccgaactcggccgaggaagaacatgccgccgaactggcccgttcgccccgcgacggccag
ggcgtcagcgatccgctggccgatgtcgtgccctcgggcaccggcaccgacgccgatgcg
ggcgagtatctgaacgactga
DBGET
integrated database retrieval system
