Sphingomonas hankookensis: PPZ50_06060
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Entry
PPZ50_06060 CDS
T08811
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
shan
Sphingomonas hankookensis
Pathway
shan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PPZ50_06060 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shan03021
]
PPZ50_06060 (rpoB)
03400 DNA repair and recombination proteins [BR:
shan03400
]
PPZ50_06060 (rpoB)
Enzymes [BR:
shan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PPZ50_06060 (rpoB)
Transcription machinery [BR:
shan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PPZ50_06060 (rpoB)
DNA repair and recombination proteins [BR:
shan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PPZ50_06060 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
PlcR
B
Motif
Other DBs
NCBI-ProteinID:
WCP73101
LinkDB
All DBs
Position
complement(1269942..1274087)
Genome browser
AA seq
1381 aa
AA seq
DB search
MATKATATGTHKRRIRKVFGDIHEVVQMPNLIEVQRESYEQFLRSDPSIGYVSGLEKTLR
SVFPIRDFAGTAELDFVTYELEDPKFDVEECRQRGITYAAPMRVTLRLIVFEVDADTEAR
SVLDIKEQDVYMGDMPLMTENGTFFINGTERVIVSQMHRSPGVLFDHDRGKTHASGKYLF
AARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLYALGMTGEDILNHFYNRVTFVR
GEGGWRIPYAPENWRGQKPAFDIVDANTGEVVFPAGTKISPRLANKAGKDGLADLLIPTE
EIFGRYSAYDLINEQTGQIYIEAGDEVSPENLELLDQAGIERIELLDIDHVSTGPWIRNT
LNVDKAEEREQALSDIYRVMRPGEPPTLETAEALFAGLFFDPERYDLSAVGRVKLNMRLD
LDTPDTVTTLRSEDILAVVKTLVDLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLR
MERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRV
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFSRVNKYGFIETP
YRRIIDGKVSDEVVYLSAMEEQKHTVAQASAALNDDGSFAEELVSARQAGEFLMALPENV
TLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKAEAPFVGTGMEETVAR
DSGAAISAKRAGVVDQVDAARIVIRATGEVDATESGVDIYTLMKFQRSNQSTCINQRPLV
KVGDVVKAGEVIADGPSTEFGELALGRNALVAFMPWNGYNYEDSILISERIVKDDVFTSI
HIDEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILAGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVDVRVFNRHGIDKDERAMAIERE
EIERLKKDSDDERGILNRATWSRLREMLEGQTATAAPKGVKKGVVIDRDLLDSVEKHEWW
RFAVADDAAQGNLEAIKAQYDEAVKRITDKFHDRREKLERGDELPPGVLKMVKVFVAVKR
KLQPGDKMAGRHGNKGVISRILPQEDMPFLEDGTPVDLVLNPLGVPSRMNVGQIFETHLG
WAARNLGMQVARSLRDWREANPDAVAGEMPAAVKDRLKEIYGDHYAEDLDTRSNEQLAEL
VQNISTGVPMGTPVFDGARESDVSDMLQLAGLHSSGQSVLFDGRTGDQFDRMVTVGIIYM
LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLT
VKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNIELSSLEENDGLAEAA
E
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaggcaaccgcaaccggcacgcacaagcgccgcatccgcaaggtgttcggc
gacatccacgaagtggtgcagatgccgaacctgatcgaggttcagcgcgagagctacgaa
cagttcctgcgcagcgacccgtcgatcggctatgtttccgggcttgagaagacgctgcgg
tcggtattcccgatccgcgacttcgccggcaccgccgagctggacttcgtcacctacgaa
ctggaagatcccaagttcgacgtcgaggaatgccgtcagcgcggcatcacctatgcggca
ccgatgcgcgtcacgctgcgcctgatcgtgttcgaggtcgacgccgataccgaggcccgc
tcggtcctcgatatcaaggagcaggacgtctacatgggcgacatgccgctcatgaccgag
aacggcaccttcttcatcaacggcaccgagcgcgtgatcgtgtcgcagatgcaccgttcg
ccgggcgtgctgttcgaccatgaccgcggcaagacccacgccagcggcaagtatctcttt
gccgcgcgcgtgatcccgtatcgcgggtcgtggctcgatttcgaattcgacgccaaggac
atcgtcaacgtccgcatcgaccgcaagcgcaagttgccggtgacgtcgctgctctatgcg
ctgggcatgacgggcgaggacattctcaaccacttctacaaccgcgtgaccttcgtccgt
ggcgaaggcggctggcgcattccgtatgcgccggaaaactggcgtggccagaagccggcg
ttcgacatcgtcgacgccaacaccggcgaagtcgtgttcccggccggcaccaagatttcg
ccgcgcctcgccaacaaggcgggcaaggacgggctggccgacctgctgatcccgaccgag
gaaatcttcggccgctacagcgcctatgacctgatcaacgaacagaccggccagatctat
atcgaagccggtgacgaggtttcgcccgagaatctcgaactgctcgaccaggccggcatc
gagcggatcgaactgctcgacatcgaccatgtgtcgaccggtccgtggatccgcaacacg
ctgaacgtcgacaaggccgaggagcgcgaacaggcgctgtcggacatctatcgcgtgatg
cgccccggcgaaccgccgacgctggaaaccgccgaagcgctgttcgcagggctgttcttc
gatcccgagcgctacgacctgtcggccgtcggccgcgtcaagctgaacatgcggctcgac
ctcgacacgccggacacggtgaccacgctacgcagcgaggacattctggctgtggtcaag
acgctggtcgacctgaaggacggcaagggcgaagtcgacgatatcgacaatctcggcaac
cgccgcgtgcgttcggtcggcgagctgctggagaaccagtatcgcgtcgggctgctgcgc
atggagcgtgcggtcaaagagcgcatgtcgtcggtcgacgtatcgacggtcatgccgaac
gacctcatcaacgcgaagccggcggtcgccgcggtgcgcgaattcttcggctcgtcgcag
ctgtcgcagttcatggaccagaccaacccgctgtccgaagtgacgcacaagcgtcgcgtc
tcggcgctcgggccgggtggtctgacgcgtgagcgcgccggcttcgaggtccgcgacgtt
cacccgacgcactatggccgcatctgcccgatcgaaacgccggaaggcccgaacatcggt
ctgatcaactcgctggctaccttcagccgcgtcaacaagtacggcttcatcgagaccccc
tatcgtcgcatcatcgacggcaaggtctcggacgaggtcgtgtatctgtcggcgatggaa
gagcagaagcacaccgtcgcgcaggcgtcggccgcgctgaacgacgacggcagcttcgcc
gaggaactggtgtcggcacgtcaggccggcgaattcctgatggcgctgcccgagaacgtc
acgctgatggacgtgtccccgaagcagctggtgtcggtcgccgcgtcgctcattccgttc
ctggaaaacgacgacgccaaccgcgcgctgatgggttcgaacatgcagcgtcaggcggtg
ccgctggtgaaggcggaagcgccgttcgtcggcaccggcatggaagagaccgtggcgcgc
gattcgggcgcggcgatctcggccaagcgggcgggcgtggtcgatcaggtcgatgcggcc
cgcatcgtgatccgcgcgaccggtgaggtcgatgcgaccgagagcggcgtcgacatctac
acgctgatgaagttccagcgttcgaaccagtcgacctgcatcaaccagcgtccgctggtg
aaggtgggcgacgtggtgaaggcgggcgaagtcatcgccgacggcccgtcgaccgaattc
ggcgaactggcgctgggccgcaacgcgctcgtcgcgttcatgccgtggaacggctacaat
tatgaggactcgatcctcatcagcgagcggatcgtgaaggacgacgtgttcacgtcgatc
catatcgacgagttcgaggtgatggcccgcgacaccaagctcgggccggaagacatcacc
cgcgacattcccaacgtgggtgaagaagcgctgcgcaacctcgacgaggcgggcatcgtc
tatatcggtgccgaggtcgagccgggcgacattctcgccggcaagatcacgcccaagggc
gaatcgccgatgacgccggaggaaaagctcctgcgcgcgatcttcggtgaaaaggccagc
gacgtgcgcgatacctcgctgcgcctgccgccgggcgtgtcgggtacggtcgtcgacgtc
cgcgtcttcaaccgtcacggcatcgacaaggacgagcgcgcgatggcgatcgagcgcgag
gagatcgagcgcctgaagaaggactcggacgacgagcgcggcatcctcaaccgtgcgacg
tggtcgcgcctgcgcgagatgctcgaagggcagaccgcgacggccgcgcccaagggcgtc
aagaagggcgtggtcatcgaccgcgacctgctcgacagcgtcgaaaagcatgagtggtgg
cgcttcgccgtcgccgacgacgcggcgcagggcaatctcgaagcgatcaaggcgcagtat
gacgaggcggtgaagcgtatcaccgacaagttccacgaccgccgcgagaagctggagcgt
ggcgacgagctgccgccgggcgtgctcaagatggtcaaggtcttcgtcgcggtgaagcgc
aagctgcagccgggcgacaagatggccggccgtcacggcaacaagggtgtcatctcgcgc
atcctgccgcaggaagacatgccgttcctcgaagacggaacgccggtcgacctggtgctg
aacccgctgggcgtgccgtcgcgcatgaacgtcgggcagatcttcgaaacgcaccttggc
tgggcggcgcgcaacctgggtatgcaggtcgcacggtcgctgcgcgactggcgcgaggcg
aacccggatgcggtcgcgggcgaaatgccggcggcggtcaaggatcgcctgaaggagatc
tacggcgatcactatgccgaggacctcgacacgcgttcgaacgagcagctggccgagctg
gtccagaacatcagcacgggcgttccgatgggcaccccggtgttcgacggcgcgcgtgag
agcgacgtgtcggacatgctgcagctggccgggctgcacagctcgggtcagtcggtgctg
ttcgacgggcggaccggcgaccagttcgaccggatggtcaccgtcggcatcatctacatg
ctgaagctgcaccatctggtcgacgacaagatccacgcgcgttcgatcgggccgtacagc
ctcgtcacccagcagccgctgggcggcaaggcgcagttcggtggccagcgcttcggggaa
atggaagtgtgggcgctccaagcctatggcgccgcctacacgctccaggaaatgctgacg
gtgaagtccgacgacgtggtcggccgcaccaaggtctatgaagcgatcgtcaagggcgac
gacaccttcgaggccggcatccccgagagcttcaacgtgctggtcaaggaaatgcgctcg
ctgggcctcaacatcgagttgagcagcctggaggagaatgacggactggccgaggcggcg
gaataa
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integrated database retrieval system
