Sphingomonas hankookensis: PPZ50_07035
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Entry
PPZ50_07035 CDS
T08811
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
shan
Sphingomonas hankookensis
Pathway
shan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPZ50_07035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shan03019
]
PPZ50_07035
03009 Ribosome biogenesis [BR:
shan03009
]
PPZ50_07035
Enzymes [BR:
shan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PPZ50_07035
Messenger RNA biogenesis [BR:
shan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PPZ50_07035
Ribosome biogenesis [BR:
shan03009
]
Prokaryotic type
rRNA helicases
PPZ50_07035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
WCP73288
LinkDB
All DBs
Position
1515229..1516905
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AA seq
558 aa
AA seq
DB search
MPFSTLPEPLAAALSARGYEAPTAVQAAVLTPDAEGRDLLVSAQTGSGKTVAFGLAIARD
LLDAEDKMPRAGAPLALVIAPTRELALQVARELLWLYGPTGARIVSCVGGMDAARERRNL
SHGAHIVVGTPGRLRDHLERGALDLSGLKVAILDEADEMLDMGFREDLEGILDGTPAERR
TLLFSATLAKPIVALAKRYQKDAFRIDTREAERGHGDISYQAMTVAPNDIENAVVNLLRL
HEPDTAFLFCATREAVRHLHANLVERGFDAVALSGEHSQSERNHALQALRDRRARVCVAT
DVAARGIDLPSLSLVVHVELPRDAEALQHRSGRTGRAGKKGIAALIVPFQRRRRVEGLLR
DAKINAEWIGVPTPEQIHAADRERLLAKLAEPVEFDEADVELGARLLAEKTPEDIAALLV
RAYRAKLPAPEELSAGGMPERRERQEGPRPGFEDTVWFRMNVGRRHNADPRWLLPLLCRR
GHITKGEIGAIRIANDESAFEIPKAIAGKFIASVKRTAMPDDDLMFEQMSGPPAAPQRRT
NGAPPRHSAKPYRGGRRG
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcctttttcgacgttacccgaaccgctcgccgcggcgctttccgcgcgtggttatgaa
gccccgaccgccgttcaggcggccgtcctgacgcctgatgccgaaggacgcgacctgctg
gtgtccgcccagaccggatcgggcaagaccgtcgccttcggtctcgccatcgcgcgcgac
ctgctcgacgccgaggacaagatgccgcgcgccggcgcgccgctggcgctggtcatcgcc
ccgacccgcgagctggcgttgcaggtcgcgcgcgaattgctgtggctgtacggcccaacc
ggcgcgcgcatcgtgtcgtgcgtcggcggcatggatgcggcgcgcgaacgccggaatctg
agccatggcgcgcatatcgtcgtggggacgccggggcgtctgcgcgatcacctcgaacgc
ggcgcgctcgacctgtcggggctgaaggtcgcgatcctcgacgaagccgacgagatgctc
gacatgggctttcgcgaggatctcgaagggattctcgacggcacgccggccgagcgccgc
acgctgttgttctcggcgacgctcgccaagccgatcgtggcgctggccaagcgctaccag
aaggacgcgttccgcatcgacacgcgcgaggcggagcggggccatggcgacatcagctat
caggcgatgaccgtcgcgccgaacgatatcgagaatgcggtcgtcaacctgctgcgcctg
cacgaaccggacaccgcgttcctgttctgcgcgacgcgcgaagcggtgcgccacctgcac
gccaatctggtcgagcgcggtttcgatgcggtcgcgctgtcgggcgagcattcgcagtcg
gagcgcaaccatgcgttacaggcgctgcgtgaccgccgtgcgcgcgtctgcgtcgcgacc
gacgttgccgcccgcggcatcgatctgccgtcgctgagcctggtcgtccatgtggaactg
ccgcgtgatgccgaagcgctccagcaccgttcgggccgcaccggccgcgcgggcaagaag
ggcatcgccgcgctgatcgtgccgttccagcgtcgtcgccgggtcgaaggactgctgcgc
gatgcgaagatcaacgccgaatggatcggcgtgccgacccccgagcagattcacgcggcc
gatcgggagcgcctgctcgccaagctggccgagccggtcgaattcgacgaggccgatgtc
gaactgggcgcgcgcctgctggccgagaagacgccggaagatatcgccgcgctgctggtc
cgcgcctatcgcgccaagctgcccgcgcccgaggaattgtcggctggcggcatgcccgaa
cgacgcgagcgccaagaagggccgcgtccggggttcgaggacacggtgtggttccgcatg
aatgtcggtcgccggcacaatgccgatccgcgctggctgctgccgctgctgtgccgtcgc
ggtcacatcaccaagggtgagatcggcgcgatccgcattgcgaacgatgaatcggcgttc
gaaattcccaaggcgatcgcgggcaagttcatcgcctcggtcaagcgcacggcgatgccg
gacgatgacctgatgttcgaacagatgtcgggtccgccggccgctccgcagcgccggacc
aatggcgcaccgcctcgccattccgccaagccgtatcgcggcgggcgtcgggggtga
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