Sphingomonas hankookensis: PPZ50_07875
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Entry
PPZ50_07875 CDS
T08811
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
shan
Sphingomonas hankookensis
Pathway
shan03030
DNA replication
shan03430
Mismatch repair
shan03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PPZ50_07875
03430 Mismatch repair
PPZ50_07875
03440 Homologous recombination
PPZ50_07875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shan03032
]
PPZ50_07875
03400 DNA repair and recombination proteins [BR:
shan03400
]
PPZ50_07875
Enzymes [BR:
shan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PPZ50_07875
DNA replication proteins [BR:
shan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PPZ50_07875
DNA repair and recombination proteins [BR:
shan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PPZ50_07875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WCP73449
LinkDB
All DBs
Position
complement(1670766..1671647)
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AA seq
293 aa
AA seq
DB search
MTFSNVGRELAPAEDGDSSVRLLHRLDVQEGPTGDGIAKGPHVGLVLDVETTGLDVERDA
IIELAMRRFRYDDQGVITHIDRAYEWTEDPGKPIPPEIAMLTGLRDEDVAGQIIDDEAAV
RLLRSATIVIAHHSRFDRRWVERRLEGAQGLAWACTMEQVDWRSRGFDGRSLGFLLCQAG
WFHDGHRAGADVDAVIQLLRHPFEDGRTALADLLERSASPSWVVRAVGADFSVKDLLRSR
GYRWDPARKTWWTEVTDDERGREEFWLAANVYSTSARALGPTFEEISATTRFL
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgacgttctcgaacgtcgggcgcgaactcgcgcccgcggaagacggcgattcgtccgtt
cgcctcctgcacaggctcgacgtgcaggaggggccgaccggcgacggcatcgccaagggt
ccgcatgtcggactggtgctcgacgtggagaccacgggcctcgacgtcgaacgcgacgcc
atcatcgaacttgcgatgcgccggttcaggtatgacgatcagggcgtcatcacccacatc
gaccgcgcctacgaatggaccgaggacccgggaaagccgatcccgccggagatcgcgatg
ctgaccggccttcgcgacgaggacgtcgccggtcagatcatcgacgacgaggctgcggtt
cgcctgctgcgatcggccaccatcgtgatcgcccaccacagtaggttcgaccgtcgctgg
gtcgagcgtcggctcgagggggcacagggtctcgcctgggcctgcaccatggagcaggtc
gactggcgcagccgtggcttcgatggtcggagcctcggcttcctgctctgtcaggcagga
tggttccacgacggccaccgggcgggcgccgacgtggatgcggtgatccagctccttcgt
cacccgttcgaggacggccggaccgcgctcgccgatctgctcgagcgttccgcaagcccg
agctgggtggtgcgcgccgtgggtgcggacttctcggtcaaggatctgctccggtcgcgc
ggataccgttgggaccccgcccgcaagacctggtggaccgaggtcaccgacgacgagcgc
gggcgcgaggagttctggctggcggccaacgtctattcgacttcggcgagggcgctcggg
ccgacgttcgaggagatctcggccacgacgaggttcctgtga
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