Sphingomonas hankookensis: PPZ50_10645
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Entry
PPZ50_10645 CDS
T08811
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
shan
Sphingomonas hankookensis
Brite
KEGG Orthology (KO) [BR:
shan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
shan03016
]
PPZ50_10645 (rnd)
Enzymes [BR:
shan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PPZ50_10645 (rnd)
Transfer RNA biogenesis [BR:
shan03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PPZ50_10645 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
DUF321
Motif
Other DBs
NCBI-ProteinID:
WCP70838
LinkDB
All DBs
Position
complement(2246509..2247684)
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AA seq
391 aa
AA seq
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MHIHPLIEDSQTLAALCTRLAQSDFVAVDTEFMRENSYWPELCLIQIANTEEAAAIDPMA
PGIDLTPLLHLLTDNEDVLKVFHAGGQDIEIVYNLTGKTPFPLFDTQVAAMALGQGEQVG
YSNLVDAYLGITVDKGARFTDWSRRPLDDRQIDYAIADVTHLSVIFPKMLAKLRKTGRGL
WLDEEMERIADPANYFNDPEQVWQRIRVNSRKPEVLGRLKALGKWRELEAQGKNLPRGRI
VKDETIADLAGNPPRRQGDLAKVRGLSAAWAHNDIGGRMMAALADAEPLPAREMPGRDER
KPALGKEGALVADLLKLLLKIRANEIKVASRLLARSDDLEALAAGQRDGLSILNGWRFEQ
FGRDALALVEGQLGFTVLGGKLKMTRAEVVE
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgcatatccatccgttgatcgaagacagccagaccctcgctgccctctgcacccgcctc
gcccagtccgacttcgtagccgtcgacaccgagttcatgcgcgagaacagctattggccg
gaactctgcctgatccagatcgccaataccgaggaagccgccgcgatagatccgatggcg
ccggggatcgacctgacgccgctgctccacctgctgaccgataacgaggacgtgctgaag
gtcttccacgccggcgggcaggatatcgagatcgtctataacctgaccggcaagaccccc
ttccccctgttcgatacgcaggtggcggcgatggcgctgggtcagggggagcaggtcggc
tattcgaacctggtcgacgcctatctggggattacggtcgacaagggggcgcggttcacc
gactggtcgcggcggccgctggacgaccggcagatcgactatgcgatcgccgacgtgacc
catttgtcggtgatctttcccaagatgctggccaagctgcgcaagaccgggcgcgggctg
tggctggacgaggagatggagcggatcgccgatccggccaattacttcaacgatcccgaa
caggtgtggcagcgcatccgggtcaacagccgcaagcccgaagtgctggggcggttgaag
gcactgggcaagtggcgcgagctggaggcgcaggggaagaatctcccgcgcggacggatc
gtcaaggacgagacgatcgccgatctggccggcaatccgccgcgcaggcagggcgatctg
gcgaaggtgcgcgggctgtcggcggcatgggcgcacaacgatatcggcggacggatgatg
gcggcgctggccgatgccgaaccgttgccggcgagggaaatgccgggccgcgacgagcgc
aaacccgcgctgggcaaggaaggcgcgctggtcgccgacctgctgaaactgctgctgaag
atccgggcgaacgagatcaaggtcgcatcgcggctgctggcgcggtcggacgatctggaa
gcgctcgccgccgggcagcgcgacgggctctcgatcctgaatggctggcggttcgaacag
ttcggccgcgacgcgctggcgctggtcgagggtcagcttgggttcaccgtgctgggtgga
aagctgaagatgacccgagcggaggtagtggaatga
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