Sphingomonas hankookensis: PPZ50_12155
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Entry
PPZ50_12155 CDS
T08811
Name
(GenBank) DNA polymerase III subunit gamma/tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
shan
Sphingomonas hankookensis
Pathway
shan03030
DNA replication
shan03430
Mismatch repair
shan03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PPZ50_12155
03430 Mismatch repair
PPZ50_12155
03440 Homologous recombination
PPZ50_12155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shan03032
]
PPZ50_12155
03400 DNA repair and recombination proteins [BR:
shan03400
]
PPZ50_12155
Enzymes [BR:
shan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PPZ50_12155
DNA replication proteins [BR:
shan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PPZ50_12155
DNA repair and recombination proteins [BR:
shan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PPZ50_12155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_gamma3
DNA_pol3_delta2
DUF3646
DNAX_ATPase_lid
AAA
AAA_22
AAA_5
AAA_30
RuvB_N
AAA_16
AAA_19
AAA_14
DUF815
DEC-1_N
AAA_assoc_2
AAA_18
Adeno_E1B_55K_N
AAA_24
PIF1
Glyco_tranf_2_5
AAA_2
Motif
Other DBs
NCBI-ProteinID:
WCP71110
LinkDB
All DBs
Position
complement(2582428..2584074)
Genome browser
AA seq
548 aa
AA seq
DB search
MSDSFLALDIPEQPAAAQPYRVLARKYRPQTFSQLIGQDAMVTTLGNAIKRGRLAHAFLL
TGVRGVGKTSTARLIAKALNCIGPDGQGGPTIDPCGVCEPCRAIAEGRHIDVVEIDAASN
NGVDSVREMTEAVRYAAVSARFKIYIIDEVHMMSTPAFNALLKTLEEPPAHVKFLLATTE
VHKVPVTVLSRCQRFDLRRIPADLLAGHFAHVVEAEGVEAEPEALQLIARAAEGSARDGL
SILDQAIAHGGLDGEGVRADAVRQMLGLSDRGAIRTLFDLLLKADGPGALRALRAQYDLG
VDPASVLRTLLETVHAVTIVKVGGDRGPGQSAEERAAFDGWSALSFPMLHRLWQLLLKGH
EEVSRAALPIEACEMALLRIVHASSLPDPGTLAKQLAAGQVPAMGAPPAPAPAPAAEPVA
VADPVPETAEQVAQLLSKHGRHSLEAQFRNCARLIRLEPQLIELSGARPLPADFTRDLEN
ALKGITGSHWRVLIGEGTGEPTLREQETAKAESERDQVLNSPLVQAALAAFPDATLDHWQ
RSDGSIAR
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgtccgactccttcctcgccctcgatatccccgaacagcctgcagcggcgcagccgtac
cgcgtgctcgcgcgcaaatatcggccgcagacgttcagccagcttatcggccaggatgcg
atggtcacgacgctgggcaatgcgatcaagcgtgggcggctggcgcatgcgtttttgctg
accggggtgcgcggggtcggcaagacgtcgaccgcgcggctgatcgccaaggcgctgaac
tgtatcgggccggacgggcagggcgggccgacgatcgatccttgcggggtgtgcgagcca
tgccgggcgatcgccgaggggcggcatatcgacgtggtcgagatcgacgccgcgtcgaac
aacggcgtcgacagcgtgcgcgagatgaccgaggcggtgcgctatgccgcggtgtcggcg
cgcttcaagatctacatcatcgacgaagtgcacatgatgtcgacgccggcgttcaatgcg
ctgctgaagacgctggaagagccgcccgcgcacgtcaagttcctgctggcgacgaccgag
gtgcacaaggtgccggtgacggtgctgtcgcgttgccagcggttcgatttgcggcggatt
cctgccgatctgctggcagggcatttcgcgcatgtggtcgaggcggagggcgtcgaggcc
gaaccggaggcgctgcaactgatcgcgcgggcggcggaaggatcggcgcgcgacgggctg
tcgatcctcgaccaggcgatcgcgcatggcgggctggacggcgagggcgtgcgggccgat
gccgtgcggcagatgctgggcctgtcggatcggggggcgattcggacgctgttcgacctg
ctgttgaaggcggatgggccgggggcgctgcgggcgctcagggcgcaatatgatctgggc
gtcgatccggcgtcggtgctgcggacgctgctcgaaaccgtgcatgcggtgacgatcgtc
aaggtcggcggcgatcgcggaccgggccagtcggcggaggagcgcgcggcgttcgacggg
tggagcgcgctgtcgttcccgatgctgcaccggctgtggcagttgctgctgaaggggcat
gaggaagtgtcgcgcgcggcgttgccgatcgaggcgtgcgagatggcgttgctgcgcatc
gtccatgcatcgtcgctgcccgatccggggacgctggcgaagcagttggcggcggggcag
gttccggcgatgggcgcgcctcctgcgccggcgcccgcgcctgccgccgaaccggtggcg
gtggccgatccggtgccggagacggccgaacaggtcgcccagctgctatcgaagcatggg
cggcattcgctggaggcgcagtttcgcaattgcgcgcggctgatccggctggagccgcag
ctgatcgaactgagcggcgcgcggcccttgcctgccgacttcacccgtgatctggaaaat
gcgctgaaggggatcaccggcagccattggcgcgttctgatcggcgaggggacgggcgaa
ccgaccttgcgcgaacaggaaacggccaaggcggaatcggagcgcgatcaggtcctcaac
tcgccgctggtacaggcggcactggcggcgtttccggacgccaccctcgatcattggcaa
cgcagcgacgggagtatcgcgcgatga
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