Sphingomonas hankookensis: PPZ50_12225
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Entry
PPZ50_12225 CDS
T08811
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
shan
Sphingomonas hankookensis
Pathway
shan03030
DNA replication
shan03430
Mismatch repair
shan03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PPZ50_12225 (dnaE)
03430 Mismatch repair
PPZ50_12225 (dnaE)
03440 Homologous recombination
PPZ50_12225 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shan03032
]
PPZ50_12225 (dnaE)
03400 DNA repair and recombination proteins [BR:
shan03400
]
PPZ50_12225 (dnaE)
Enzymes [BR:
shan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PPZ50_12225 (dnaE)
DNA replication proteins [BR:
shan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PPZ50_12225 (dnaE)
DNA repair and recombination proteins [BR:
shan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PPZ50_12225 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
COE1_HLH
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
WCP71122
LinkDB
All DBs
Position
complement(2601907..2605497)
Genome browser
AA seq
1196 aa
AA seq
DB search
MAHSGFVPLRIFSSFTMLEGAIDPKAIAKQARKLGFPAAGLTDRNGLYAAMAFSDACKDQ
GVQPVVGTLLAVARPGGVEGVEPEIDWLPLFAQDRQGYDNLCALVSMAHLDRPVEIPAHV
PIDALIGRSDGLVALTGAGDGALARLFAAGREDEALAYTDRLQALFGDRLYVELARRGEG
VEQRAEPFLLDLAYARDLPLVATNPCCFAEADFHDAHDAMLCIASSSYVASEDRQRSSPE
AWLKPAPVMQAMFADLPEALANTLVVAQRCAVAAPKRKPILPSLAGDREGEALKLRVDSR
AGLVDRLRKIVALEEGMVTAEVAVAAPAPWEDAPTPAATGEVSELSEDELVARFPDYFSR
LDFELDVICQMGFPGYFLIVADFIKWAKDHDIPVGPGRGSGAGSAVAWALTITDLDPIKL
GLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQQKYGRDQVAQIITFGKLKARAVLKD
TGRVLQMSYGQVDRLAKLVPNHPTDPWTLDRAINGVSELNQQYEREEDVRRLLDLAMKLE
GLPRHSSTHAAGVVIGDRPLSELVPLYRDPRSDMPVTQFDMKYVEGAGLVKFDFLGLKTL
SVLKFAVELLARRGVVVDLDSLLWDDPATYELLKRGDTVGVFQLESEGMRRTLTAVRPTN
FGDIIALVSLYRPGPMDNIPSFGARKAGREEIIYPHDLLEPILKETYGIFVYQEQVMQAA
QILAGYSLGGADMLRRAMGKKVKAEMDAQRSIFVKGCAEVNGIPEAKANELFDLIDKFAG
YGFNKSHAAAYALLAYQTAWLKAHHPHEFFAASMAFDYAQTDKLAIFVDDMKRLRIDCLP
PCINSSDATFGVEETPEGGLAVRYALSALKGVGERAMELMVEERAAKGPYKSLDDFAGRV
DPKLLNKRQIETLAAAGAFECVEGDRAGVHALADTLMATAQRTEANRSSGQGGLFGEASG
AVETAMRVPDVHWSLTQAIAAEKDAFGFYFSAHPLDRYAHLASAHGARKIADLADTHVPE
GGRVGATVAALVEDARWRTSARGKRYMMATLSDATGQVPVTCFDEGPANDLEAAGKVGGC
GLFTLELDRRAGDESARATVKSLKPFDVIARDVRLRLDLTIDDPAAYPALAGLVQHERGA
RGEIWVSVPATPGIEARVCLGRDFRIDGELAERVGRLQGVTQAAFDTVKAPLAAVG
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggcgcattccgggttcgtaccgcttcgtatcttttcctccttcaccatgcttgaaggg
gcgatcgatcccaaggcgatcgcgaaacaggcacgcaagctgggctttcccgccgccggg
ctgaccgatcgcaacgggctgtacgcagccatggcgttttcggatgcgtgcaaggatcag
ggcgtgcagccggtggtcggcacactgctggcggttgcgcggccgggcggggtcgagggc
gtcgagccggagatcgactggttgccgctgttcgcgcaggaccgccaaggctacgacaat
ctgtgtgcgctggtgtcgatggcgcatctcgaccggccggtcgagattccggcgcatgtg
ccgatcgatgcgctgatcgggcgcagcgacgggctggtcgcgctgaccggggcgggcgac
ggggcgctggcgcggctgttcgctgccgggcgcgaggacgaagccctggcctataccgac
cggttgcaggcgctgttcggcgaccggctctatgtcgaactggcgcggcggggcgagggc
gtcgagcagcgggcggagccgttcctcctcgacctcgcctatgcccgcgacctgccgctg
gtcgcgaccaatccgtgctgctttgccgaggcggatttccacgatgcgcatgacgcgatg
ctgtgcattgcctcctcaagctatgtcgcgagcgaggatcgccagcggtcgtcgcccgag
gcgtggctgaagccggcgccggtgatgcaggcaatgttcgccgacctgcccgaggcgctg
gccaacacgctggtcgtggcgcagcgttgcgcggtggcggcgcccaagcgcaagccgatc
ctgccgagcctggccggcgatcgcgagggcgaggcgttgaagctgcgcgtcgattcgcgt
gccgggctggtcgaccggctgcgcaagatcgtcgcgctggaagagggcatggtgaccgcc
gaggtcgcggtcgcggcacccgcaccatgggaggatgcgccgacgccggcggcgaccggc
gaggtgtcggaattgtccgaggacgagctggtcgcgcgcttccccgactatttcagccgg
ctcgatttcgaactcgacgtcatctgtcagatggggtttccgggctacttcctgatcgtt
gccgacttcatcaaatgggcgaaggaccatgatattccggtggggccgggccgtggttcg
ggcgcaggttcggcggtcgcctgggcgctgaccatcaccgatctcgacccgatcaagctg
gggctgctgttcgaacgcttcctgaacccggaacgcgtgtcgatgcccgacttcgacatc
gacttctgcgaaacccggcggggcgaggtcatccgctacgtccagcagaaatatggccgc
gatcaggtggcgcagatcatcaccttcgggaagctgaaggcgcgcgcggtgctgaaggat
accggccgcgtgctgcagatgagctatggccaggtcgatcgcctcgccaagctggtgccg
aaccatccgaccgatccgtggacgctggaccgggcgatcaacggcgtatccgagctgaac
cagcagtacgagcgggaggaggatgtgcgccgcctgctcgacctcgccatgaagctggag
gggttgccgcggcacagctcgacccacgcggcgggcgtggtgatcggcgaccggccgctt
agcgaactggtgccgctgtaccgcgatccgcggtccgacatgccggtgacgcagttcgac
atgaaatatgtcgagggcgcgggcctcgtgaagttcgactttctgggcctcaagacgctg
tcggtgctgaagttcgcggtcgaattgctggcgcggcggggggtcgtggtcgatctcgac
agtctgctctgggacgatccggcgacctacgaactgctcaagcgcggcgacacggtcggg
gtgttccagctggaatcggaagggatgcggcggacgctgaccgcggtgcggccgaccaat
ttcggcgacatcatcgcgctggtgtcgctgtaccggccggggccgatggacaacatcccc
tcgttcggcgcgcgcaaggccggacgggaagagatcatctatccccacgacctgctcgaa
ccgatcctgaaggagacctacgggatcttcgtctatcaggaacaggtgatgcaggccgcg
cagatcctggcgggctattcgctgggcggcgcggacatgctgcggcgcgcgatgggcaag
aaggtcaaggcggagatggacgcgcagcgatccatcttcgtgaagggctgtgccgaggtg
aacgggattccggaggcgaaggccaacgagctgttcgacttgatcgacaagttcgcagga
tacgggttcaacaagagccacgcggcggcctatgcgctgctggcgtatcagacggcgtgg
ctgaaggcgcatcatccgcatgagttcttcgcggcgtcgatggcgttcgattatgcgcag
accgacaagctggcgatcttcgtcgatgacatgaagcggttgcgcatcgactgcctgccg
ccctgcatcaattcgagcgatgcgactttcggggtcgaggagacgccggaaggtggcctt
gcggtgcgctatgcgttgtcggcgctgaagggcgtcggcgagcgggcgatggaactgatg
gtcgaggagcgggcggcgaaggggccgtacaagtcgctcgacgatttcgcggggcgggtc
gatcccaagctgctcaacaagcggcagatcgagacgctggcggcggcgggcgcgttcgaa
tgcgtcgagggcgaccgggcgggcgtgcacgcgctggccgatacgctgatggcgaccgcg
cagcggaccgaggcgaaccggtcgagcgggcagggcgggttgttcggggaagcgagcggt
gccgtcgagaccgcgatgcgcgtgcccgacgtccattggtcgctcacgcaagcgatcgcg
gcggagaaggatgcgttcggattctatttctcggcccatccgctcgaccgttacgcgcat
ctcgccagtgcgcatggcgcgcgcaagatagccgatctggccgatacccatgtgcccgaa
ggcggccgagtcggcgcgacggtggcggcgctggtcgaggatgcgcgctggcggacctcg
gcacgtggcaagcggtacatgatggcgacgctgtccgatgcgaccgggcaggtgccggtg
acgtgtttcgacgaggggccggcgaacgatctggaggcggcgggcaaggtcggcgggtgc
gggctgttcacgctggaactcgaccggcgggcgggtgacgagagtgcgcgggcgacggtc
aagtcgttgaagccgttcgacgttatcgcccgcgacgtgcggctgcggcttgacctcacc
atcgacgatcccgccgcctatccggcgctggccgggctggtccagcatgagcggggagca
cgcggcgagatctgggtttcggtgccggctacgccaggaatcgaagcccgggtatgcctg
ggccgcgatttccggatcgatggcgagcttgccgaacgggtcggcaggctgcaaggtgtc
acccaggcggcgttcgatacggtgaaggcaccgctcgccgccgtgggatag
DBGET
integrated database retrieval system
