Sphingomonas hankookensis: PPZ50_12690
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Entry
PPZ50_12690 CDS
T08811
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
shan
Sphingomonas hankookensis
Brite
KEGG Orthology (KO) [BR:
shan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shan03032
]
PPZ50_12690
03400 DNA repair and recombination proteins [BR:
shan03400
]
PPZ50_12690
Enzymes [BR:
shan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PPZ50_12690
DNA replication proteins [BR:
shan03032
]
Prokaryotic type
DNA Topoisomerases
PPZ50_12690
DNA repair and recombination proteins [BR:
shan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PPZ50_12690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
WCP71208
LinkDB
All DBs
Position
2687287..2688318
Genome browser
AA seq
343 aa
AA seq
DB search
MEPAEDDDLPCPAGCVFSDCEAPGITRKKLTRGWGYYDPDGDRITDRNEIDRLNAIGLPP
AYRDAWFCPDPTGHIQAIGWDEKGRKQYRYHADFRAAQESAKYDRCASFGHKLPKLRAQV
ERDLAKRALSRDRAVAAVVRLLDLGRVRVGNEGYARVNKSFGATTLRKRHAKLSGTRLKL
QYRAKSGKMRVLTITDRSLASFVRKCQDLPGQHLFRWVDAEGETHPVTSSDVNAYIRAAM
GDDFTAKHFRTWGASVLAFATLADADQDISLKTMLGPVVDALGNTPAIARKSYVHPLLID
LVKDGQSAFRETLRLPRAAKHLSRHERGLIALLEAQDRVAVAA
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atggaaccagccgaagacgacgacctcccctgccccgccggctgcgtcttttccgattgc
gaggcgccgggcatcacccgcaagaagctgacgcgcggctggggctattacgacccggac
ggcgaccggatcaccgatcggaacgagatcgaccggctgaacgccatcggcctgcccccc
gcctatcgcgacgcatggttctgccccgatcccaccggtcatatccaggcgatcggctgg
gacgagaagggtcgcaagcaatatcgctatcacgccgatttccgcgcggcgcaggagagc
gccaaatatgatcgctgcgcgtcgttcgggcacaagctgccgaagctgcgcgcgcaggtg
gagcgggaccttgccaagcgcgcgctgtcacgcgaccgggcggtggcggcggtggtgcgg
ctgctcgatctcgggcgggtgcgcgtcggcaacgaaggctatgcgcgggtgaacaagagc
ttcggcgcgacgacgctgcgcaagcggcatgcgaagctgagcgggaccaggctgaagctc
caatatcgcgccaagtcgggcaagatgcgggtgctgacgatcaccgaccgctcgctcgcc
agtttcgtgcgcaagtgccaggacctgccgggacagcacctgttccgctgggtcgatgcc
gagggggagacgcatccggtcacgtcgagcgacgtcaacgcctatatccgcgcggcgatg
ggcgatgacttcaccgccaagcatttccggacgtggggtgcgagcgtgctggcgttcgcg
acgctcgccgatgccgatcaggatatcagcctgaagacgatgctgggcccggtggtcgat
gcgctgggcaatacgccggccatcgcccgcaaatcctatgtccacccgctgctgatcgat
ctggtcaaggacgggcagagcgcgtttcgcgagaccctgcgcctgccacgggccgcgaaa
catctcagccgccacgaacgcgggctgatcgcgctgctcgaagcgcaggaccgcgtcgcc
gtcgccgcttga
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