Sphingomonas hankookensis: PPZ50_13315
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Entry
PPZ50_13315 CDS
T08811
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
shan
Sphingomonas hankookensis
Pathway
shan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PPZ50_13315 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shan03400
]
PPZ50_13315 (mfd)
Enzymes [BR:
shan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPZ50_13315 (mfd)
DNA repair and recombination proteins [BR:
shan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PPZ50_13315 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
SecA_DEAD
AAA_16
AAA_30
RecG_dom3_C
Hera_RBD
Motif
Other DBs
NCBI-ProteinID:
WCP71322
LinkDB
All DBs
Position
2802913..2806365
Genome browser
AA seq
1150 aa
AA seq
DB search
MPDLSKILSAPRSLTLAGVPTGFLPVLLADLARGAKGDLVYIAPDEAAMRAIATTAPFFA
PDLSVLQFPAWDCLPYDRASPTLRSMAERLSALHSLQSKAKGPRLIVTTVNAATQRTLTP
FRIRQLVARLAPGERISLPRLSALLQANGYNRVDTVHDAGEFAVRGGLVDLWPSGSDSGL
RLDFFGDEIETVRTFSPEDQRTTGRVDGFTLLPASEALLDEDSIKRFRTRYREKFGATAT
GDPIYQAISDGRRLSGMEHWLPFFEERLETFFDHLSPEAVIVRDAGVPAAAEQRFESIAD
YHTNRVRAQTNDPGSYRPLLPAALYLSADEWADRLSDTAAHQVTPFHAPDSATSVDFEVD
GPRDFTPERTQQANIYEAVVDHIASLRKQGRKPILASYSEGARERLMGLLADHDLTGVST
VETWQRALGGAKSTVSFVVLPLDHGFTSADVAVLTEQDMLGDRLVRRAKRRKNTDAFLQE
LATLSPGDLVVHADHGIGRYVGLTQVPVAKAPHDCVQLEYAGGDKLYVPVENLEVLSRYG
AGEEGASLDRLGGEAWQRRKARMKDRIREIAGDLIATAAKRAMRPAEVAEPDSGGYPAFV
DRFPYQETDDQERAIADVLEDLGAGRPMDRLVVGDVGFGKTEVALRAAFVAAMAGMQVAI
VCPTTLLARQHYNNFKARFEGFPIEVGRLSRLVTATEAKKVRDGLADGTIDVVVGTHAVL
SKQVDFKRLGLVIVDEEQRFGVTHKERLKAMKADVHVLTLTATPIPRTLQMAMSGLRELS
VIQTPPVDRLAVRTYIMPWDPVVLREALLREHYRGGQAYFVTPRIADLPEIEKFLSEEVP
EIRYVVAHGQMAPTEVEERMSAFYDKRYDLLVSTTIVESGLDIPSANTLIINRADKFGLA
QLYQLRGRVGRSKTRAYAYMTTPPERLVSEAAEKRLKVLSDLESLGAGFQLASHDLDQRG
AGNMLGDEQSGHIKEVGFELYQSMLEEAILDAKAGGLRDDKPKDFSPTITVDAPILIPED
YVPDLDLRMGLYRRLNDVEDRAGIDAFATELIDRFGKLPVATSNLLQLIEAKLNAKKACI
AKIDVGAKGAIVSFHEVPSVEGLLAYVDKLNGTAKLRPDMKLVISRSFGDPQARLNAALQ
ISRGLAKAAG
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacctctccaaaatcctgtccgccccccgctcgctgaccctcgcgggcgtgccc
acaggcttcctcccggtcctcctcgccgacctcgcccgcggcgcaaagggggacctcgtc
tacatcgcccccgacgaagcggcgatgcgcgccattgcgaccaccgcacccttcttcgcc
cccgacctgtcggtgctccagttcccggcctgggactgcctcccctacgaccgcgccagc
ccgacgctgcgctcgatggccgagcgcctctccgcgctccactcgctccagtcgaaggcc
aaaggcccgcgcctgatcgtcaccaccgtcaacgccgcgacccagcggacgctgaccccg
ttccgcatccgccagctcgtcgcccgcctcgcgccgggcgagcgcatctcgctcccccgc
ctctccgcgctgctgcaggcgaacggctataaccgcgtcgataccgtccacgacgccggt
gagttcgccgtccgcggcggcctcgtcgatctgtggccgtccggctccgactccggcctg
cgcctcgatttcttcggcgacgagatcgaaaccgtccgcaccttctcgcccgaagaccag
cgcaccaccggccgcgtcgacggcttcaccctgctccccgcctccgaagccctgctcgat
gaggattcaatcaagcgcttccgcacccgctaccgcgaaaagttcggcgcgaccgcgacc
ggcgatccgatctatcaggcgatcagcgacggccgccgcctgtcgggcatggagcactgg
ctgccctttttcgaagaacgcctcgaaaccttcttcgaccacctctcgcccgaagcggtc
atcgtccgcgacgccggcgttcccgccgccgccgaacagcgcttcgaatcgatcgccgac
tatcacaccaaccgtgtccgcgcgcagaccaacgacccgggcagctaccgcccgcttctc
cccgccgcactctacctgtcggccgacgaatgggccgaccgcctgtcggacaccgccgcg
catcaggtcacgcccttccacgcccccgacagcgccacctcggtcgatttcgaagtcgac
ggcccccgcgacttcacgccggaacgcacgcaacaggcgaatatctacgaagccgtcgtc
gaccacatcgcgtccttgcgcaaacagggccgcaagccgatcctcgccagctattcggag
ggtgcacgcgaacggctgatgggcctgctcgccgatcacgacctgaccggcgtctcgacc
gtcgagacatggcaacgggcgctgggcggtgccaagtcgaccgtctccttcgtcgtcctc
cccctcgaccacggcttcaccagcgccgacgtggcggtcctcaccgaacaggacatgctc
ggcgatcgtctcgtccgccgcgccaagcggcgcaagaacaccgacgccttcctgcaggaa
cttgccaccctttcccccggcgacctcgtcgttcatgccgatcacggcattggccgctat
gtcgggctgacccaggtcccggtggccaaggccccccacgactgcgtccagctcgaatat
gccggcggcgacaagctgtacgtgccggtcgaaaatctcgaagtcctcagccgctacggc
gcgggcgaggaaggcgcctcgctcgaccgtttgggcggcgaggcatggcaacggcgcaag
gcgcggatgaaggaccgcatccgcgaaatcgcgggcgacctgatcgccactgccgcgaaa
cgcgcgatgcgcccggccgaggtcgccgaacccgatagcggcggctaccccgcctttgtc
gaccgtttcccgtatcaggaaaccgacgatcaggaacgcgccatcgccgacgtgctcgaa
gacttgggcgcaggccgcccgatggaccgcctcgtcgttggcgacgtgggcttcggcaag
accgaggtcgcgctccgcgccgcgttcgtcgccgccatggctgggatgcaggtcgcgatc
gtctgcccgacgacccttctcgcccgccagcattacaacaatttcaaggcccgcttcgaa
ggattcccgatcgaagtcggccgcctcagccgcctcgtcaccgcgaccgaggcgaagaag
gtccgcgacggccttgccgacggcacgatcgacgtcgtcgtcggcacccatgccgtgctg
tcgaaacaggtcgatttcaaacgcttggggctggtcatcgtcgacgaggaacagcgtttc
ggcgtgacgcacaaggaacggctgaaggcgatgaaggccgacgtccacgtcctgacgctg
accgccaccccgatcccgcgcacgctgcaaatggcgatgtcgggcctgcgcgagctatcg
gtgatccagaccccgccggtcgatcgcctcgcggtgcgcacctacatcatgccatgggac
ccggtggtcctgcgcgaggcgctgctacgcgaacattatcgcggcggacaggcctatttc
gtcaccccgcgcatcgccgacctgcccgagatcgagaagttcctgtcggaggaagttccc
gaaatccgctacgtcgtcgcccatggccagatggcgccgaccgaggtcgaggaacgcatg
tcggccttctacgacaagcgctacgatttgctcgtatcgaccaccatcgtcgagagcggc
ctcgacattccctcggccaacacgctcatcatcaaccgcgccgacaagttcggcctggca
caactctaccagctgcgcggccgcgtcggccgttcgaagacccgcgcctatgcctatatg
accacgccccccgaacggctggtcagcgaagcggcggaaaagcgcctcaaggtcctctcc
gacctcgaatcgctgggcgccggtttccagcttgccagccacgacctcgaccagcgtggc
gcgggcaacatgctgggcgacgaacaatcgggccatatcaaggaagtcggcttcgaactc
taccagtcgatgctcgaggaagcgatcctcgacgccaaggccgggggtcttcgcgacgac
aagcccaaggacttctcccccacaatcaccgtcgacgcgccgatcctgattccggaggat
tatgtccccgacctcgacctgcgcatgggcctctatcgccgcctgaacgatgtcgaggat
cgcgccggcatcgacgccttcgccaccgaactgatcgaccgcttcggcaagctgccggtc
gccaccagcaacctgctgcaactgatcgaggcgaagctgaacgccaagaaagcctgcatc
gccaagatcgacgtcggcgccaagggcgcgatcgtcagcttccacgaggtccccagcgtc
gaagggctgctcgcctatgtcgacaagctcaacggcactgccaagctgcgtcccgacatg
aaactggtgatcagccgcagcttcggcgacccgcaggcccgcctgaacgccgcgctgcag
atctcgcgcgggctggcgaaggcggcggggtaa
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