Sphingomonas hankookensis: PPZ50_17365
Help
Entry
PPZ50_17365 CDS
T08811
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
shan
Sphingomonas hankookensis
Pathway
shan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PPZ50_17365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shan03400
]
PPZ50_17365
DNA repair and recombination proteins [BR:
shan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PPZ50_17365
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PPZ50_17365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_21
nSTAND1
DnaJ_CXXCXGXG
AAA_29
AAA_16
RsgA_GTPase
DUF4350
AAA_15
Motif
Other DBs
NCBI-ProteinID:
WCP73871
LinkDB
All DBs
Position
pSZ.B2R2_1:complement(84126..86780)
Genome browser
AA seq
884 aa
AA seq
DB search
MSKDQEPQTTPGKERAPRSGFVQVRGARQNNLKNVDVDVPRDAFVVFTGISGSGKSSLAF
GTLYAEAQRRYLESVAPYARRLIDQAGVPEVDAIDGLPPAVALQQQRGSANARSSVGSVT
TLSSLVRMLYSRVGEYPRNQPMLYAEDFSPNTVAGACPTCHGIGRVYDATEETMVPDDTL
TIRERAIAAWPPAWHGQNLRDILVSLGYDVDTPWRDLPKKDRDWILFTDETPTVPVYAGL
TPEQTRVALKRRMEPSYQGTFTGARRYVLETFANTKSALMKKRVSQYIIGRDCPTCDGKR
LKREALSVKFAGLDIAEFGDLTVLKLRDLLTPVAHGEYGGAAAAPKGHVLGKAARDAAVE
RRVAAGGSAHKAAPDVRRTPNLSDEKRVAAQRLASELLERLGPLIDLGLGYISLDRSTPT
LSSGELQRLRLATQLSSQLFGVVYVLDEPSAGLHPADGEALLTILERLKAAGNSLFVVEH
DLDVIRHAEWLVDVGPGAGEKGGEVLYSGPIAGLADVEASITRRYLFAEPVAHDRTPREA
KAWLRLEGVTRNNLRGLDVELPIGCFTAVTGVSGSGKSSLVSQALPELVAEQLGGSPAAE
EEDADPLLDVAQEETEGRIVAGMEHVRRLVRVDQKPIGRTPRSNLSTYSGLFDHVRKIFA
GTPLAKKRRYSPGRFSFNVAEGRCPVCEGEGFVMVELLFLPSVYAPCSTCHGSRYNPQTL
EVEWNGRNIAQVLELTVDEACDFFAGEASVMRSLDVLREIGLGYLRLGQPATELSGGEAQ
RIKLATELQRAQRGNTIYILDEPTSGLHPSDADRLMRHLQGLVDVGNTVVVVEHDMRAIA
QVDWVIDLGPGAGEEGGLIIASGVPSDVAEAEGSLTAPYLKAAL
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaggatcaggagcctcaaaccacccccggcaaggaacgcgcgccgcgctccggc
ttcgttcaggtacgcggcgcgcggcagaacaatctcaagaatgtcgacgtggacgtgccg
cgcgacgccttcgtggtgttcaccggcatatccggatcgggcaaatcgagcctcgctttc
ggcaccctctatgccgaggcacagcgccgctatctggaatcggtcgcgccctacgcccgc
cgcctgatcgatcaggccggtgtgccggaggttgacgctatcgacgggttgcctcccgca
gtcgcgttgcagcagcagcgcggctcggccaatgcgcggtcctcggttgggagcgtgacg
acgctctccagcctggtacggatgctctactcgcgcgtcggcgaatatccgcgcaatcag
cccatgctctatgcggaggacttctcgccaaacacagtcgcgggcgcctgcccgacctgc
cacggcatcgggcgcgtctatgacgcgaccgaagagacgatggtgcccgacgacacgctg
acgatccgggaacgcgccatcgccgcatggccgcccgcgtggcacggccagaacctgcgc
gatatcctcgtctcgctcggctatgatgtcgacaccccatggcgggatcttccgaagaag
gatcgcgactggatactcttcaccgacgagacgccgacggtgccggtctatgcgggtctg
acgcccgagcagacgcgcgtcgccctcaagcgccgcatggagccgagctatcagggcacc
ttcaccggcgcccgtcgctatgtgctggagacgttcgccaacaccaaaagcgcgctgatg
aagaagcgcgtctcgcaatatatcataggccgcgattgcccgacctgcgacggcaagcgg
ctgaagcgcgaggctctgtcggtgaagttcgcgggcctcgacatcgccgagtttggcgac
ctgacggtgctgaagctccgggacttgctcacgcctgtcgcgcatggcgagtatgggggc
gccgcggcggccccgaagggccatgttcttggcaaggcggcccgcgatgcggcagttgaa
cgcagggtcgcggcgggaggctcggcgcacaaggcagcgcccgacgtgcgccgcacgccc
aacctctccgatgagaagcgggtcgccgcgcagcgtctcgcatccgagctgctcgaacgg
ctcggcccgctgatcgatcttggccttggctacatctcgctcgaccgaagcacgccgacg
ctttcctccggcgagctgcaacgcctgcgccttgccactcaattgtcctcgcagcttttc
ggcgtggtctatgtgctggacgagccctcggcggggctgcacccggcagacggcgaagct
ttgctcaccatccttgagcggctgaaagcggcgggcaactcgctgttcgtcgtcgagcat
gatcttgacgtgatccgccatgccgaatggctggtcgatgtagggccaggagcaggcgaa
aagggcggtgaagtgctctacagcgggccgatcgcgggactggccgacgtcgaggcgtcg
atcacgcgccgctatctgttcgcagagcccgtcgcccatgaccggaccccgcgcgaagca
aaggcttggctccgtctagagggggtgacgcgcaacaacctgcgcggcctcgacgtcgag
cttccgatcggttgcttcaccgctgtcaccggggtttcgggatcgggcaagtccagtctg
gtcagccaggcgctgccggagcttgtcgcggaacagctcggcggctcgccggctgccgag
gaagaggatgccgatccgctgcttgatgttgcgcaggaagagaccgaaggccgcatcgtt
gcgggcatggagcatgtgcgcagactggtgcgggtcgatcagaagccgatcggccgcacc
ccacgctcgaacctctccacctacagcggcctgttcgatcatgtgcgcaagatctttgcc
ggcactccgttggccaagaagcgccgttacagccccggccgcttctcgttcaacgtcgcc
gaaggccgctgcccggtatgtgagggcgaggggttcgtgatggtggagctgctgttcctg
ccaagcgtctatgcgccgtgctcgacctgccacggcagccgctacaacccgcaaacgctc
gaagtcgaatggaacggccgcaacatcgcccaggtgctggagctgacggtggacgaggcg
tgcgacttcttcgcgggtgaggcgtccgtcatgcgctcgctggatgtgctgcgggagatc
ggccttggatatctgaggctcgggcagccggcgacggaactgtcgggcggcgaggcgcag
cgcatcaagcttgcgaccgagctgcaacgcgcccagcgcggcaacaccatctacatcctc
gacgagcctacttcggggcttcacccgtccgacgcggaccggctgatgcggcacctgcag
ggccttgtcgacgtgggcaatacggttgttgtcgtcgagcatgacatgcgcgccatcgca
caggtggattgggtcatcgatctcggaccgggagccggggaggaaggtggcctaatcatc
gccagcggcgtccctagcgacgttgcagaggcggaaggcagtctgaccgcgccctatctc
aaggcggcgctttag
DBGET
integrated database retrieval system
