KEGG   Shewanella halotolerans: K0H81_01760
Entry
K0H81_01760       CDS       T09172                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
shao  Shewanella halotolerans
Pathway
shao03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:shao00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    K0H81_01760 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shao03021]
    K0H81_01760 (rho)
   03019 Messenger RNA biogenesis [BR:shao03019]
    K0H81_01760 (rho)
Transcription machinery [BR:shao03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     K0H81_01760 (rho)
Messenger RNA biogenesis [BR:shao03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     K0H81_01760 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA AAA_25 NACHT Spore_III_AA S1CSD-TOTE-2
Other DBs
NCBI-ProteinID: QYJ90356
LinkDB
Position
complement(386269..387534)
AA seq 421 aa
MNLSELKEKSISDLVILAQDMKIENMARARKQDIIFAILKAHAKSGEDIFGGGVLEILQD
GFGFLRSADGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVSEVN
FDKPENSRSKILFENLTPLHAEERIRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPP
KAGKTLLLQNIAQSITYNNPEVVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQELHLSRKAAEKRVFPAIDF
NRSGTRREEKLTTPDELQKMWILRKILNPMDEVSGMEFLIDKLAMTKTNEEFFTAMKRAK
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatttatcagaattaaaagagaagtcgatttcagacctagtcattttggctcaggat
atgaaaatcgagaacatggcccgagcccgcaagcaggacattattttcgcaatccttaaa
gcccacgccaaaagcggtgaagatattttcggtggcggggtactcgaaatcctgcaagat
ggttttggtttccttcgtagcgcagacggttcttacctggcaggtccagacgatatctat
gtttcaccgagtcaaattcgccgctttaacatgcgcaccggtgataccatttttggtaaa
atccgccccccgaaagaaggtgaacgttatttcgcgctactgaaagtcagtgaagtcaac
ttcgacaaacccgaaaactcccgcagcaagatcctcttcgaaaacttaaccccacttcat
gcagaagaacgtatccgaatggaacgtggtaacggttcaaccgaagatattaccgcccgt
attctcgacctctgctcgccaatcggtaagggccaacgtggtctgatcgtggcgccgccg
aaggcaggtaaaaccttgctgctgcaaaacatcgcccagagcatcacctacaacaaccca
gaagttgtgctcatggtactgctgatagacgaacgtccagaagaagtaaccgagatgcaa
cgcctggtgaagggtgaagtggtcgcctctaccttcgacgagccagccagccgtcacgta
caggtagccgagatggttatcgagaaggctaagcgtctggttgaacataagaaagacgta
gtgatcctgctcgactctatcacccgtctggcacgcgcctacaacacagtgatcccttca
tcaggtaaggtacttaccggtggtgtggacgccaacgcattgcaccgtcctaagcgcttc
ttcggcgccgctcgtaacatcgaacatggcggcagcctgaccattatcgccaccgcgctg
gtcgatacaggctctaagatggatgaagtgatctacgaagaatttaagggtacgggtaac
caggaacttcacctgtctcgtaaggccgccgagaagcgtgtcttcccagctatcgacttc
aaccgctcgggtacccgtcgcgaagagaagctgaccacaccggacgagctacagaagatg
tggatcctgcgtaagatcctcaatcctatggacgaagtcagcggcatggagttcctcatc
gacaagctggccatgaccaagaccaacgaagagttcttcaccgcgatgaaacgcgctaag
tcctaa

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