KEGG   Shewanella halotolerans: K0H81_02955
Entry
K0H81_02955       CDS       T09172                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
shao  Shewanella halotolerans
Pathway
shao02024  Quorum sensing
shao03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:shao00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    K0H81_02955 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    K0H81_02955 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:shao03019]
    K0H81_02955 (hfq)
   03036 Chromosome and associated proteins [BR:shao03036]
    K0H81_02955 (hfq)
Messenger RNA biogenesis [BR:shao03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     K0H81_02955 (hfq)
Chromosome and associated proteins [BR:shao03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    K0H81_02955 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: QYJ90572
LinkDB
Position
650060..650338
AA seq 92 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPARPFNVSSHHNTPNQAAGYNAPHDDSAE
NT seq 279 nt   +upstreamnt  +downstreamnt
atggcaaaggggcaatctttacaagacccatttttgaacgcattacgacgtgaacgcgtt
ccggtatctatctacctagttaacggtatcaagcttcagggacaagttgagtcattcgat
cagtttgttattttattgaagaacactgtcagccagatggtttataagcacgctatctct
accgtggtgcctgcgcgtccatttaacgtgagcagccatcacaacacgcctaaccaggcg
gcgggttacaatgcaccacatgacgatagcgctgagtaa

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