Shewanella halotolerans: K0H81_05800
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Entry
K0H81_05800 CDS
T09172
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
shao
Shewanella halotolerans
Pathway
shao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0H81_05800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shao03019
]
K0H81_05800
Enzymes [BR:
shao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0H81_05800
Messenger RNA biogenesis [BR:
shao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0H81_05800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
AAA_19
DXP_reductoisom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QYJ91098
LinkDB
All DBs
Position
1320891..1322231
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AA seq
446 aa
AA seq
DB search
MNFDALPLDPLLAQAAKACGYETLTQVQAKVIPTALAGRDLMACAQTGTGKTAAFSFVLL
QRLLNQPRDNGQLSALILTPTRELAIQVADSISRYSQFTELTTLAVYGGANINPQRKALA
RGVDILVATPGRLFDLLSQHDLSLQTVDQLIVDEADRMLDMGFVRDIERTKRLLCVSHST
MLFSATFTPEVKTLATKMLDNPEWINVTSASSGPQIEQKVYSLDARRKAELLAELIGRNN
WQQVLVFVNTKESAERLHRELKLDGIKNAVFHGDKTQGARNRALEQFKAGELRVLVATDV
AARGLDITALPLVINLELPDEPQDYVHRIGRTGRAGLSGVSISFVAKQDETALEAIEALI
GKALPREVQPGYELGAPLPARYRELDTRVTSKAAQPKHGKGQKFGGQDNRRGQSRTKAPQ
RKASSDKAGNNKARRPSSDKGFRGKR
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgatgccctcccgttagaccccttactggcccaggcggctaaggcctgcggc
tacgagaccctgacccaagttcaggccaaggtgatccccacggcccttgccgggcgggat
ctgatggcctgcgcccagaccggaaccggtaagacggcggcctttagctttgtgttgttg
cagcgcctgctcaatcagccaagagataatgggcagctcagcgccctgatcctgactcca
acgagagagctggcgatccaggtggcagacagcatcagtcgctacagccagttcaccgag
ctgaccactctggccgtctatggcggcgccaacatcaatccccaacgcaaggccttggcg
agaggcgtcgatattctggtggccacgccgggtaggctgttcgatctcttgagccaacac
gacttgagcctgcagacggttgatcagctcattgtcgatgaggcagatcgcatgctcgac
atgggatttgtgagggatatcgagcgcaccaagcggctgttgtgcgtgtctcactcgacc
atgttgttctcggccacctttaccccagaggtgaagacgttggccaccaagatgctggat
aaccctgagtggatcaatgtgaccagcgctagtagcgggccgcagatcgagcagaaggtc
tactccctagatgcaaggcgtaaggcggagctgctggccgagcttatcggtcgcaataat
tggcaacaggtgctggtgttcgtcaacaccaaggagagcgccgagcgcctgcaccgcgag
ttgaagctcgatggcatcaagaatgcggtgtttcacggggataagacccagggcgcgcgc
aaccgggcgctggagcagtttaaggccggcgagctgcgggtgctggtggcaacagatgtg
gccgcccgcggcctggatatcaccgcgctgcccttagtgatcaacctagaattgcccgat
gagcctcaggattatgtgcaccgcatcggccgtaccggccgcgccggtcttagcggcgtc
agtatctccttcgtcgccaagcaagatgaaacagcactcgaggcgatcgaggctcttatc
ggcaaggccttgccacgtgaggtacagcccggatatgagctgggggcgccgctaccggcc
aggtatcgcgagctcgacaccagagttacctctaaggcggctcagcctaagcatggcaaa
gggcagaagttcggcggtcaggataatcgaagaggccagagtcgcactaaggcgccccag
cgcaaggctagtagtgacaaggctggtaataacaaggcgagacgcccatcgagtgataag
ggctttcggggcaagcgctag
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