Shewanella halotolerans: K0H81_08995
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Entry
K0H81_08995 CDS
T09172
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
shao
Shewanella halotolerans
Pathway
shao03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K0H81_08995 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shao03400
]
K0H81_08995 (recB)
Enzymes [BR:
shao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K0H81_08995 (recB)
DNA repair and recombination proteins [BR:
shao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K0H81_08995 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_30
AAA_25
ResIII
Motif
Other DBs
NCBI-ProteinID:
QYJ91685
LinkDB
All DBs
Position
complement(2112078..2115737)
Genome browser
AA seq
1219 aa
AA seq
DB search
MATQTLDPLSLPLSGTRLIEASAGTGKTYTIAGLYVRLLLGDSQRAPLSCEQILVVTFTN
AATQELRDRIRKKIQLAYRAFLGMEVDDPLINTLYSEAEPEARSQALKRLDLALKSLDEA
AIFTIHGFCQRILSDMAFESSLLFESEFTLDDSQYLHHAVRDFWREACYPLPGYLAQIIS
NKFSDPDGLTKQLRPLLGANQASVSPTPEAFSQVADRLSQSLSRLKLIWPRERDVTLELL
KALPLNGTRFGKKDQGYPKLETLFATMDNWAAQPLSLPDSKVLGALALGGLKLNKGGEIP
TPEQAPLLAHIERVTETIDTLVPSFLYGARDGIKARFAAQKQLKNLRTPDDLLIALADAL
SEETDQEQALARAIAKRFPIALIDEFQDTDPLQYQIFSSIYQGQQVSTDSDLGLLMIGDP
KQAIYAFRGADIHTYIHARGQTENHYSLDTNYRSSQAMVEAVNQLFSRSDDPFISQAIPF
ELIKPSPMAAEKRLVEKVPQTSALRLKLLGEDPNAGLNKASARSQLAEDAANEIARLLNE
AQRGECLKQNKPLKAKDIAVLVRDRNEAAYIKSALSSRGIGAVFLSRDSVFDTLVAKELA
QVLLAIANPKDERALRSAMATALLGYDAQAIHAFNLDEDVRQQQLEAFDNLHQTWLKRGI
IPCMMALAADTHLIERLLTADEGQRRLTDFRHLGELLQQKAMELDGISALLNWYQQTLIE
VSSTEEAQLRLESEQNLVQIVTIHKSKGLEYPICFLPFVSLARDNRRKPAPMLYHEQDAL
VWDIDQSDEGWAKYKAENLAEDLRLLYVALTRPVLACYCYVANHSRFTKRDGISSQLFET
AIGYLLGIETKACEFADIQAAAQALASEAISVDLVESDAPKLDFDPIDTADAVKLAPRPL
SRRREIPWRVGSYSGLVKHSAHEQVSPGMGDEAFPELEQLAPDSEQMSRFSFERGANAGS
FLHWVLEQIDFTQANTSLGDELPKAMERFGIDSEWQEMLHAWYLDLLHVPLDGDELCLAS
LSQAQKLVEMEFYMPIGKLDAPGLNQLLSQYGYSAALSFETLEGMLKGFIDLTFEYQGKF
YIADYKSNHLGDHLSHYEKPAMQRAIAGHHYDLQYIIYSLALHRYLKLRLPGYQYEQHVG
GCYYLFLRGMSAKSPSTGVYYDKPPLGLIQALDTLLSEANANESHAKSQAESQAESQPHS
PTDRQSDMQSGPAQGELDL
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atggcgacacagacactggatcccttaagcctgccgctgtcgggcactcgcctcatcgag
gccagcgcgggtaccggcaagacctacaccatcgccggactctatgtgcgcttattattg
ggcgatagccagcgcgcgccgctaagctgcgagcagatcctggtggtgacttttaccaac
gccgccactcaggagcttagggatcgtatccgcaagaagatccagctggcctaccgcgcc
tttctcggcatggaagtggacgatcccctgatcaacacactctattcagaggcggagccc
gaggcccgtagccaggcgctgaagcggctggatctcgccctcaagtcgctggatgaggca
gctatttttaccatacatggtttctgtcagcgtattttgtcggacatggcgttcgaatca
tccctgctgtttgagtcagaatttaccctggatgacagccagtatctgcaccatgcggtg
cgcgacttctggcgagaggcctgctatccgctgcccggttatctggcgcagatcatcagc
aataagtttagcgatcccgatggcctgaccaagcagctaaggccgctactcggagccaat
caggccagcgtctcgccgacacccgaagccttcagtcaggtggcggatcgcctgagtcag
agcctttcgagactcaagcttatctggccgcgcgagcgcgatgtcacccttgagctgctc
aaggcgctgccgctcaacggcacccgctttggcaagaaagatcagggctatcccaagctc
gagaccctgttcgccaccatggataactgggcggctcagccgctctccctgcccgacagc
aaggtgctgggggcgctggccttaggcggcttaaagctcaacaagggcggcgagatccca
acgccggagcaggcgccgctacttgcccatatcgagcgcgtcacagagacaatagacacc
ttagtgcccagcttcctctacggcgcccgcgatgggataaaggcccgttttgcggcgcag
aaacagcttaagaatctgcgcacaccggacgatctgctgatcgccctggccgatgccctg
agcgaggagaccgaccaggagcaggccctggcccgcgccatcgccaagcgtttccccatc
gcccttatcgatgagtttcaggacacagatccgctgcaatatcagatcttcagcagtatc
tatcaaggccagcaggtctcaacagacagcgacctcggcctcttgatgattggtgacccc
aaacaggcgatctacgcctttcgcggcgccgatatccacacctatatccatgccaggggc
cagacggaaaaccattacagcctggacaccaactaccgctccagccaggccatggtcgag
gcggtcaatcagctgttctcgagaagcgacgatcccttcatcagccaggcgatccccttt
gaactcatcaagccctcacccatggcggcagagaaacgcttggtcgagaaggtcccccaa
acgagcgcgctgcggcttaagctgctcggcgaagaccctaacgccggactcaataaggcc
agcgcccgcagccagttggccgaagatgccgccaacgagatagccaggctgctcaacgag
gctcagcgcggcgagtgcttgaagcagaataagccgctcaaggcaaaagatatcgcggtg
cttgtcagggatcgcaacgaggccgcctatatcaaatcggcgctgagtagccgggggata
ggcgccgtctttctcagccgcgacagcgtattcgatactctggtggccaaggaactcgcc
caggtgctactggccatcgccaatcccaaggatgagcgcgcgctgcgcagcgccatggcc
accgccctgctgggctatgatgcccaggcgatccatgcctttaatctggatgaagatgtg
cgtcagcagcagctcgaggccttcgacaacctgcatcaaacctggctcaagcgcgggatc
ataccctgtatgatggccttggcggcagatacccacctcatcgagcgtctattgactgcg
gatgaggggcagcgccgcctgaccgatttcaggcaccttggcgaactgctacagcaaaaa
gcgatggagctcgacggcatcagcgctctgctcaactggtatcagcagacgctgatcgag
gtgagcagcacggaagaggcccagctaaggctggagagcgagcagaatctggtacaaatc
gtcaccatacacaagagtaagggtctggaatatcccatctgtttcctgcccttcgtcagc
ctggccagagacaatcgccgcaagcctgcacctatgctctaccacgagcaagatgccctg
gtgtgggatatcgaccagagcgacgaaggctgggccaaatacaaggcggaaaatctcgcc
gaagatctgcgcctgctctatgtggcgctcacccgcccggtgctggcctgctactgctat
gtcgccaaccattcgcgcttcaccaagcgtgacgggatcagcagccagttgttcgagacc
gccattggctaccttttgggcatagagaccaaggcctgtgagtttgccgacattcaggcc
gccgcccaggcgctggcgagcgaggcgatctcggtcgatttggtggaaagcgatgcgccc
aagttagactttgaccctatcgacactgccgatgccgtcaagctggcgccgcggccactt
agccgcaggcgcgagatcccctggcgggtgggcagctactcaggcctggtgaaacattcg
gctcacgaacaggtcagcccaggcatgggcgatgaggccttccccgagcttgagcagtta
gctcccgacagcgagcagatgtcacgattcagcttcgagcgcggcgccaacgcggggagt
ttcctccactgggtgctggagcagattgactttacccaggccaataccagcctaggcgat
gagctgcccaaggcgatggagcgcttcggtatcgatagcgagtggcaagagatgctgcat
gcctggtatctggatctgctgcacgtgccgctcgatggtgatgagctgtgtctggcgagc
ctaagccaggcgcagaaactggtggagatggagttttatatgcctataggcaagctcgat
gcacctgggcttaatcagctgctgagtcagtatggctatagcgccgccctgagcttcgag
accctagaggggatgctcaagggctttatcgacttaaccttcgaataccagggcaagttc
tatatcgccgactataagtccaaccatctgggagatcatctgagccattatgaaaagccc
gccatgcaacgggccatcgccggtcatcactatgacctgcagtacatcatctatagcctg
gcgctacatcgctacctcaagctgcgcctgcccggctaccagtatgagcagcatgtgggc
ggctgctactacctcttccttaggggcatgtcggccaaatcaccgagtaccggcgtctac
tacgacaagcccccccttgggctgatccaggctctggacaccctgcttagcgaggctaat
gccaatgaatctcacgctaagtcacaggcagagtctcaagctgagtctcagccgcactcg
ccaacagacaggcaatctgacatgcaatcaggcccagcacaaggagagctagacctatga
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