Shewanella halotolerans: K0H81_11695
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Entry
K0H81_11695 CDS
T09172
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
shao
Shewanella halotolerans
Pathway
shao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K0H81_11695 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shao03400
]
K0H81_11695 (mfd)
Enzymes [BR:
shao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K0H81_11695 (mfd)
DNA repair and recombination proteins [BR:
shao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K0H81_11695 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QYJ88480
LinkDB
All DBs
Position
2734377..2737859
Genome browser
AA seq
1160 aa
AA seq
DB search
MNAFSILTPPKVKGVKSPQTLSQLTGAAQAISLAKLCEQYSGMTLVVTPDTPSALRLEAE
LGYLIAPKSIPVMLFPDRETLPYDSFSPHQDLVSQRLETLSRIPSAGHSLVIVPMSTLMV
KLPPQSFLTGNVLLLSKGDNYPLEAVRSQLVNTGYHHVEQVYEHGEFAVRGSIIDLFPMG
AQSPYRIELFDDEVESIREFDPETQRSSGEIESIRLLPAKEFPTNDAAIEGFRQRYRRQF
EVVVKEPESIYQMVSRKVMPAGIESYLPLFFDETASLFDYLPGECQLVQVGDLENAAKHH
LQEINQRYENRRVDPLRPLLPPKDLYLLTEQVFEAFKHLPRFLVKGDEATGTSVAAQIEA
LPSIAANHKLKQPLISLKEFADGGTPILFCVESEGRREALLELLAKIEIKPALLDHLESF
SHKPQPFGLIVAPLSQGAIYHPKKGPSWALVCETELFGQRIAQQRRRDKQRQVSQDALIK
DLAELKVGQPIVHLDHGVALYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVASLNLISQY
SVGADDAPQLNKLGNESWTKEKRKAIEKIRDVAAELLDVYARRQARPGEACRLDREEYAQ
FAGSFPFEETVDQETAIDAVLTDMCSPISMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQV
AILVPTTLLAQQHYENFKDRFADWPIKIEVMSRFKTAKEQQAVLKQLELGQVDIVIGTHK
LLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANIDILTLTATPIPRTLNMAMSGMRD
LSIIATPPAKRLAVKTFVREYDDATVREALLREILRGGQVYFLHNSVETIEKRAREIEAL
LPEARVVTAHGQMRERDLEKVMSDFYHQKYNVLVCTTIIETGIDVPSANTIIIERADNFG
LAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTKDAIKRLEAIGALEDLGAGFMLATQDLEI
RGAGELLGDEQSGHISKIGFTLYMEMLEDAVKSLKEGKEPSLDQMLRGQCEIDLRIPALL
PEDYVGDVNIRLSLYKRIANCATAQALDELKVELIDRFGLLPQATKNLMEVSLFKHQATA
LGIAKIEMHPKGGSLEFNNDHCVDPGFIIGLLQSQPQNYRMDGPSKLKFLMPTETDKDRL
ALLSLIISQLMQHRLGEPRV
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctttttccatcctcacaccacctaaagtcaaaggggttaagtcgccccaaacc
ctgagccagttaaccggtgccgcccaggcgataagcctggctaagctgtgcgagcagtat
agcggcatgaccttagtagtgacgccagacacgccaagcgcgctcaggctagaggcagag
ctaggctacctgatagcgccaaaatcgatccccgtgatgctgttccccgaccgggagacc
ttgccttacgacagcttctcgccccatcaggatctggtatctcaacggcttgagacccta
tcgcggatcccaagcgccggccatagcctggtgatcgtgcccatgagcaccctgatggtg
aagttgccgccgcaatcattcttaaccggcaacgtcttgctgctcagcaagggcgacaac
tatcccctggaagcagtgcgcagccagctggtcaataccggctatcatcacgtagagcag
gtgtatgagcatggcgagtttgccgtgcgcggttctatcatagatctcttccccatgggc
gcccagagcccctatcgcatcgagctgttcgatgatgaggtcgagtcgatccgcgaattt
gacccggaaacccaacgctccagcggagagatcgagtcgattcgcctgctgccggccaag
gagttcccgaccaatgacgccgccatcgaagggtttcgccaacgttaccgccgccagttt
gaggtagtggtcaaagagccggagtccatctaccagatggtgagccgcaaggtgatgccc
gccgggatcgagagctacctgcccctcttcttcgacgagacagcgagcctgttcgactat
ctgcccggcgagtgccagttggtgcaggtgggcgatcttgagaatgctgccaaacaccac
ctgcaggagataaaccagcgctatgagaaccgccgggtcgatcccctgaggccactgcta
ccgccaaaggatctctacctgctgaccgaacaggtcttcgaggcctttaagcatctgccg
cgcttcctggtcaagggcgatgaggcaacaggcaccagcgttgcggcgcagatcgaggcg
ctgcccagtatcgccgctaaccataagttgaagcagccacttatcagccttaaagaattt
gccgatggcggcacgccaattttattctgcgttgaatcggaaggccgccgcgaggcgctg
ctggaactgctggccaagatagagattaaacctgcgctgctggaccatctggagagcttc
agccataagcctcagccctttggcttaatcgtcgcgccgctatctcaaggcgccatctat
caccccaagaagggccctagctgggcactggtgtgtgaaaccgagctgtttggccagcgc
atcgcccagcaacgccgtcgcgataaacagcgtcaggtaagccaggatgcgctcatcaag
gatctggccgagctcaaagtcggtcaacctatagtccatctggatcacggcgtcgccctc
taccagggactggaaaccctggacactggcggcctggtcgccgagtacctgaaactggaa
tacgccggtggcgataaactctatgtgcccgtcgcctccctcaacctcatcagccagtac
agtgtcggcgccgatgatgcaccgcagctcaacaagctgggcaacgagagttggaccaaa
gaaaaacgcaaggcgatcgagaagatccgcgacgtggccgccgaactcttagatgtctac
gcccgccgtcaggcccgccccggtgaggcctgccgattagatcgcgaagagtacgctcag
tttgccggcagcttccccttcgaagagacggtagatcaggaaaccgccatcgatgccgtg
ctcaccgacatgtgtagccccatatcgatggatcgtctggtgtgtggcgacgtcggcttc
ggtaagactgaggtggcgatgcgcgccgccttcgttgcggtcaacgacggcaaacaggtg
gccatcttggtacctaccacgctacttgctcagcagcactatgaaaacttcaaagacagg
tttgccgactggcccatcaagatagaggtgatgtcacgctttaagaccgccaaggagcaa
caggcggtgctcaagcagctggagcttggccaggtggatatcgttatcggtacccataaa
ctgctgcagtctgaggccaagtttgaaaacttaggcctgcttatcatcgacgaggagcac
aggttcggcgtgcgtcagaaggagaagatcaaggccctgcgcgccaatattgatattttg
accctgacggctacccctatcccgcgtaccctcaacatggcgatgtctggcatgcgcgat
ctctccatcatcgccacgccgccagccaagcgattggcggttaagaccttcgtgcgcgaa
tatgatgatgccacggtgcgcgaggcactgctgcgtgagatcttaaggggcggccaggtc
tattttctccacaacagtgtcgagaccatagagaagcgcgcccgggagatagaggcgcta
ctgcccgaggcgcgagttgtcaccgcccatggtcaaatgagagaacgcgaccttgaaaag
gtgatgtctgacttctatcaccagaaatacaatgtgttggtgtgtaccaccatcatagag
acgggcatcgatgtgcccagcgccaacaccatcatcatagagcgagccgataacttcggc
ctggcgcagctgcaccagctcagggggcgtgtggggcgctcacatcatcaggcctacgcc
tatctgatgacgccccatccaaaacgcatgaccaaggatgccatcaagcgtctggaggcc
attggcgcgctggaagatctcggcgcaggcttcatgctggcgactcaagatctcgagatc
cgcggcgcgggtgaactcctgggcgatgagcagagcggtcatatctccaaaataggcttt
accctctacatggagatgctggaagatgcggtgaagtccctcaaggagggcaaggagcct
tcgctggatcagatgctcaggggacagtgtgagattgacctgcggatcccagcgctgctg
ccggaagattatgtgggcgatgttaacatccgcctgtcgctctataagcgtatcgccaac
tgcgccaccgcccaggcactggacgaattaaaggtcgagctgatcgatcgcttcggcctc
ttgcctcaggccaccaagaacctgatggaagtctcgctgttcaaacatcaggcaacggcg
ctcggcatcgccaagatagagatgcaccccaagggcggtagcctggaatttaataacgat
cactgtgtagatcctggctttatcatcggactattacagagtcagccacaaaattatcgt
atggacggcccaagtaagttaaaattcttgatgccgacagagacagacaaggataggtta
gccctgttatccctgatcatctctcaactcatgcaacatcgccttggagaaccgcgtgtt
taa
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