Shewanella halotolerans: K0H81_12845
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Entry
K0H81_12845 CDS
T09172
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K10912
two-component system, repressor protein LuxO
Organism
shao
Shewanella halotolerans
Pathway
shao02020
Two-component system
shao02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
shao00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
K0H81_12845
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
K0H81_12845
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
shao02022
]
K0H81_12845
Two-component system [BR:
shao02022
]
Lux family
LuxQN/CqsS-LuxU-LuxO (quorum sensing)
K0H81_12845
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
Mg_chelatase
AAA_16
HTH_23
AAA
HTH_29
TIP49
AAA_7
Motif
Other DBs
NCBI-ProteinID:
QYJ88675
LinkDB
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Position
complement(2958795..2960291)
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AA seq
498 aa
AA seq
DB search
MEMKETFTALLVEDSLSLGALYTEYLRGEGALVTQVNYGEDALRELAQWQPDILVLDIKL
PDMSGMDILTQAQAQYPDTVVIMITAHGSIDIAVDAMRAGAFDFLVKPFDAKRLSITLRN
ARKQRQLVSLVSKYENSLPKSNYMGFIGESLAMQTVYKTIDCVANSKASVFIVGESGTGK
EVCAQAVHHAGTRRDGPFIALNCASIPKDLIESEIFGHTKGAFTGAHASREGAASRAHGG
TLFLDELCEMDLELQSKLLRFIQTGVFHRVGSAKEEQVDVRFVSATNRDPWEEVKAGRFR
EDLFYRLHVIPIELPPLRVRGKDILLLANKLLAEYSAEEGKVFTELSDEVRQLLISYPWP
GNVRQLQNVIRQVVVLNEGPSVTKEMLPMQIVSGAAEPAEARQGRVSGAASAIGQEAVAH
ETLAQETVAASEGADKALAVGNDEIVPLWIAEKQTIEAAIARCDGNVPKAAALLDISAST
IYRKRQSWEEMERESLNA
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgaaggagacatttaccgccttactggtggaggatagcctgtctcttggcgcc
ctgtataccgagtatctgcgcggcgagggcgccctggtgactcaggtcaactatggcgag
gacgccctgagggagctggcgcagtggcaacccgacatcttggtgctggatatcaagcta
cccgacatgtcggggatggatatcttgacccaggcgcaggcccagtacccagatactgtg
gtgatcatgatcaccgcccatggcagtatcgatatcgccgtggatgccatgcgcgccggc
gccttcgactttttggtgaaacccttcgatgccaagcggctcagcattaccctgcgcaac
gccagaaaacagcgccagctggtgagcctggtcagcaagtatgaaaacagcctgcctaag
tctaattacatgggctttatcggcgaatccctagcgatgcagactgtctacaagaccata
gactgtgtggccaacagtaaggcctcagtgtttatcgtcggcgaaagcggcacgggcaag
gaggtgtgcgcccaggcggtgcaccatgcgggcacgcgccgcgacggccccttcatcgcg
ctgaactgcgcctcgataccgaaagatctgatagagagtgagatcttcggccacaccaag
ggggcctttactggcgcccatgctagccgtgaaggcgctgccagccgcgcccatggcggc
accctgtttctcgatgagctgtgtgagatggaccttgaattgcagagcaagctgttgcga
ttcattcagactggcgtgtttcaccgggtcggcagcgccaaggaggagcaggtggatgtg
cgcttcgtcagtgccaccaaccgcgatccctgggaggaggtgaaggcggggcgttttcgt
gaagatctcttctatcgcctgcatgtgatccccatagagctgccgccactgagggtcagg
ggcaaagatatcctcttactggccaacaagttgctggccgagtactccgccgaggagggc
aaggtgtttaccgagctgagcgatgaggtgcgccagctgctgataagctacccttggccc
ggtaatgtgcgtcagctgcagaacgtcattcgtcaggtggtggtgcttaacgaggggccg
agtgtcaccaaggagatgctgccgatgcagatcgtctcgggggccgccgagccagcagag
gctcgccagggccgagtgtctggtgcagctagcgctattggtcaggaagctgttgctcat
gaaactctcgcccaggaaactgtcgcagcaagcgagggggctgacaaggcgttagccgtg
ggcaatgatgagatagtgcctctgtggatcgccgagaagcagaccatagaggcggccatc
gcccgctgtgacggtaacgtacccaaggccgcggcgctgctggatatcagcgcctcgacc
atctatcgcaagcgtcagagttgggaggagatggagcgcgaaagcttaaatgcctag
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