Shewanella halotolerans: K0H81_13140
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Entry
K0H81_13140 CDS
T09172
Name
(GenBank) RNA polymerase sigma factor FliA
KO
K02405
RNA polymerase sigma factor FliA
Organism
shao
Shewanella halotolerans
Pathway
shao02020
Two-component system
shao02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
shao00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
K0H81_13140
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K0H81_13140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shao03021
]
K0H81_13140
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
shao02035
]
K0H81_13140
Transcription machinery [BR:
shao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K0H81_13140
Bacterial motility proteins [BR:
shao02035
]
Flagellar system
Flagellar assembly proteins
Stator
K0H81_13140
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
UPF0122
HTH_23
GEX3_C
M3K_C
DUF3326
Motif
Other DBs
NCBI-ProteinID:
QYJ88728
LinkDB
All DBs
Position
complement(3029923..3030642)
Genome browser
AA seq
239 aa
AA seq
DB search
MSKAAAYTCLDNKASIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASAKFD
GSKGAKFETFAGIRIRGSMLDEIRRGDWVPRSVHRNQRRIAQVIDELEQELGRDAKDNEI
ADRLDMTLDEYHHILNDVSVGKVVGIEDLGVSVDVVRQEDDHQDDAFESLAETQFHEALV
EAIKLLPERDGLVLSLYYDEALNLKEIGAVLDVSESRVSQIHSQAMLRLKAKLKHWTKI
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaagccgctgcgtatacttgtttagataacaaagcttctattgtcgaacagtat
gcaccgttggtaaaaaggattgctcaccatttactcgctcgtctacccgcctcggtgcaa
ttggatgatctgttacaagcaggtatgatgggcctgcttgaagcctcggccaagttcgat
ggcagcaagggcgccaagtttgaaaccttcgccggtatccgaattcgcggctctatgctc
gacgaaattaggcgaggagactgggtgcccaggtcggttcaccgtaatcagcgacgcata
gcccaggtgattgacgagctagaacaagaacttggacgtgacgcaaaagacaatgaaatt
gcggatcgacttgatatgacgctcgatgagtaccatcatattcttaatgatgtttctgtc
gggaaagtagttggaattgaagatcttggtgtatcggtcgatgtagtaagacaggaagac
gatcatcaggacgacgcatttgagtcactggcagagacacagttccacgaggccctcgtc
gaggcgattaaattactgccagaaagagatggattagttttgtcgttatattatgacgaa
gcattaaatttaaaagagatcggtgccgtacttgatgtcagcgaatcccgggtaagccag
atacacagccaggcgatgctcagactcaaagctaaactcaagcattggaccaaaatataa
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