Streptomyces harbinensis: HUT13_10030
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Entry
HUT13_10030 CDS
T07389
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
shar
Streptomyces harbinensis
Pathway
shar03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HUT13_10030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shar03400
]
HUT13_10030
Enzymes [BR:
shar01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HUT13_10030
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HUT13_10030
DNA repair and recombination proteins [BR:
shar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HUT13_10030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Ribosomal_S13
NFACT_N
Zn_ribbon_RRN7
Motif
Other DBs
NCBI-ProteinID:
QKV69086
LinkDB
All DBs
Position
2258947..2259858
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AA seq
303 aa
AA seq
DB search
MPELPEVEALRDFLTGHLVGREVAGALPVAFHVLKTYDPPLSTVTGRTVEAVRRHGKFLD
LDLGGGPGDRLHLITHLARAGWLRWQEKLPATPPRPGKGPLALRVTLADPPPDSSPGEGP
PGAGFDLTEAGTQKRLAVYVVRDPAEVPGIARLGPDPLDAGFTTEALAAVLGGERRQLKG
VLRDQSAIAGIGNAYSDEILHVARMSPFKPAGNLTETETAALHQAIRTTLDDAVARSRGI
AAGKLKAEKKSGLRVHGRTGEPCPVCGDTIREVSYRDSSLQYCPTCQTGGKPLADRRTSR
FLK
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactccccgaggtcgaggccctgcgcgacttcctcaccggccacctcgtcggc
cgcgaggtggccggcgcgctgccggtggccttccatgtgctgaagacgtacgacccgccg
ctgtccaccgtcaccggccgcacggtggaggcggtgcgccggcacggcaagttcctggac
ctggaccttgggggcggccccggcgaccgcctccatctgatcacccacctggcccgggcc
ggctggctgcgctggcaggagaaactgccggccactcctccccgtcccggcaagggcccg
ctcgcgctgcgcgtcaccctggccgatcctcccccggactcctcccccggggaggggccg
ccgggcgccggcttcgacctgaccgaggccggcacccagaagcggctggcggtgtacgtg
gtccgcgaccccgccgaggtgcccggcatcgcccggctcggccccgacccgctggacgcc
ggcttcaccaccgaggcgctggccgccgtcctcggcggggaacggcggcagctcaagggc
gtcctgcgcgaccagtcggccatcgccgggatcggcaacgcctactccgacgagatcctg
catgtcgcgcgcatgtcacccttcaagcccgcggggaacctcaccgaaaccgagaccgcc
gccctccaccaggcgatccgcaccactctcgacgacgccgtcgcccgctcccggggcatc
gcggccggcaagctcaaagccgagaagaagagcggcctgcgtgtccacggccgcaccggc
gaaccgtgcccggtgtgcggggacaccatccgcgaggtgtcctaccgggactcctcgctc
cagtactgccccacctgccagaccggcggcaaaccgctggccgaccggcgcacctcacgc
ttcctgaagtga
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