Streptomyces harbinensis: HUT13_22530
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Entry
HUT13_22530 CDS
T07389
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
shar
Streptomyces harbinensis
Pathway
shar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUT13_22530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shar03019
]
HUT13_22530
Messenger RNA biogenesis [BR:
shar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HUT13_22530
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
YicC-like_C
Motif
Other DBs
NCBI-ProteinID:
QKV71230
LinkDB
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Position
4930755..4932440
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AA seq
561 aa
AA seq
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MSHPHPELGRPPKLPEGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFSSLRNRLDDIEGIVLTHGHEDHIGGVPYLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGTSERIGPFDCEFVAVNHSIPDALAVAIRTPAGMAVHTGDFKMDQLP
LDGRLTDLRAFARLGEEGIDLLLSDSTNAEVPGFVSPEREISGVLRQVFSRADKRIIVAS
FASHVHRIQQIVDAAQEHGRKIAFVGRSMVRNMGIARDLGYLRVPPGLVVDVRTLDDLPD
REVVLVCTGSQGEPMAALSRMANRDHQIRIVEGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICRPRNLMPVHGEWRHLRANAELGALTGVPAD
RIVIAEDGVVVDLVKGKAKIVGKVQAGYVYVDGLSVGGVTEASLKDRRILGDEGFISVFV
VVDSSTGKIVSGPSIHSRGSGIDDAAFAEVIPKIDEALAKSAQDGVVEAHQLQQLVRRTV
GKWVSDVYRRRPMIMPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccccatccagaactcggccgcccgccgaagctcccggagggcggcctgcgg
gtcaccccgctcggcggcctcggcgagatcggccgcaacatgaccgtcttcgagtacggc
ggccggctgctgatcgtcgactgcggcgtcctcttccccgaggaggagcagcccggcatc
gacctgatcctgccggacttcagctccctgcggaaccgtctcgacgacatcgagggcatc
gtcctcacccacgggcacgaggaccacatcggcggcgtcccctacctcctgcgggagaag
ccggacatcccgctgatcggctccaagctcaccctcgccctgatcgaggccaagctccag
gagcaccgcatccggccctacaccctggaagtggcggagggcaccagcgaacgcatcggc
cccttcgactgcgaattcgtcgcggtgaaccactccatcccggacgcgctcgcggtcgcc
atccgcacccccgccggcatggccgtgcacaccggcgacttcaagatggaccagctgccg
ctggacggccgcctcaccgacctccgggccttcgcccggctcggcgaggagggcatcgac
ctgctgctgtcagactccaccaacgccgaggtccccggcttcgtctccccggagcgggag
atctccggagtgctgcgccaggtgttctcccgcgcggacaagcggatcatcgtcgcgagc
ttcgccagccacgtgcaccgcatccagcagatcgtggacgcggcccaggagcacggacgc
aagatcgccttcgtcggccgctccatggtgcgcaacatgggcatcgcccgggacctgggt
tacctgcgggttccgcccggcctcgtggtggacgtgcgcacgctcgacgatctccccgac
cgcgaggtggtgctggtctgcaccggctcccagggcgagcccatggcggccctgtcccgg
atggccaaccgcgaccaccagatccgcatcgtcgagggcgacacggtcatcctcgcctcc
tcgctgatccccgggaacgagaacgccgtctaccgggtcatcaacgggctcacccggtgg
ggcgccaacgtcgtccacaagggcaacgccaaggtccacgtctccgggcacgcctcggcc
ggcgagctgctgtacttctacaacatctgccgcccccgcaacctgatgccggtgcacggc
gaatggcgccacctgcgcgccaacgcggaactcggcgccctgaccggggtgccggccgac
cggatcgtcatcgcggaggacggcgtcgtcgtcgacctggtcaagggcaaggcgaagatc
gtcggcaaggtccaggccggctacgtgtacgtggacggcctgtccgtcggcggcgtcacc
gaggccagcctgaaggatcggcggatcctcggcgacgagggcttcatctccgtcttcgtg
gtcgtggacagcagcaccggcaagatcgtcagcggcccgagcatccactcccggggctcc
ggcatcgacgacgcggccttcgccgaggtcatcccgaagatcgacgaggccctggccaag
tccgcccaggacggggtcgtcgaggcccaccagctgcagcagctggtgcgccgtacggtc
ggcaagtgggtgtcggacgtctaccgccggcgtccgatgatcatgccggtcgtggtcgag
gtctga
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