KEGG   Streptomyces harbinensis: HUT13_22530
Entry
HUT13_22530       CDS       T07389                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
shar  Streptomyces harbinensis
Pathway
shar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:shar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HUT13_22530
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:shar03019]
    HUT13_22530
Messenger RNA biogenesis [BR:shar03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     HUT13_22530
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C RMMBL Lactamase_B Lactamase_B_2 Anti-Pycsar_Apyc1 YicC-like_C
Other DBs
NCBI-ProteinID: QKV71230
LinkDB
Position
4930755..4932440
AA seq 561 aa
MSHPHPELGRPPKLPEGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFSSLRNRLDDIEGIVLTHGHEDHIGGVPYLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGTSERIGPFDCEFVAVNHSIPDALAVAIRTPAGMAVHTGDFKMDQLP
LDGRLTDLRAFARLGEEGIDLLLSDSTNAEVPGFVSPEREISGVLRQVFSRADKRIIVAS
FASHVHRIQQIVDAAQEHGRKIAFVGRSMVRNMGIARDLGYLRVPPGLVVDVRTLDDLPD
REVVLVCTGSQGEPMAALSRMANRDHQIRIVEGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICRPRNLMPVHGEWRHLRANAELGALTGVPAD
RIVIAEDGVVVDLVKGKAKIVGKVQAGYVYVDGLSVGGVTEASLKDRRILGDEGFISVFV
VVDSSTGKIVSGPSIHSRGSGIDDAAFAEVIPKIDEALAKSAQDGVVEAHQLQQLVRRTV
GKWVSDVYRRRPMIMPVVVEV
NT seq 1686 nt   +upstreamnt  +downstreamnt
ttgagtcatccccatccagaactcggccgcccgccgaagctcccggagggcggcctgcgg
gtcaccccgctcggcggcctcggcgagatcggccgcaacatgaccgtcttcgagtacggc
ggccggctgctgatcgtcgactgcggcgtcctcttccccgaggaggagcagcccggcatc
gacctgatcctgccggacttcagctccctgcggaaccgtctcgacgacatcgagggcatc
gtcctcacccacgggcacgaggaccacatcggcggcgtcccctacctcctgcgggagaag
ccggacatcccgctgatcggctccaagctcaccctcgccctgatcgaggccaagctccag
gagcaccgcatccggccctacaccctggaagtggcggagggcaccagcgaacgcatcggc
cccttcgactgcgaattcgtcgcggtgaaccactccatcccggacgcgctcgcggtcgcc
atccgcacccccgccggcatggccgtgcacaccggcgacttcaagatggaccagctgccg
ctggacggccgcctcaccgacctccgggccttcgcccggctcggcgaggagggcatcgac
ctgctgctgtcagactccaccaacgccgaggtccccggcttcgtctccccggagcgggag
atctccggagtgctgcgccaggtgttctcccgcgcggacaagcggatcatcgtcgcgagc
ttcgccagccacgtgcaccgcatccagcagatcgtggacgcggcccaggagcacggacgc
aagatcgccttcgtcggccgctccatggtgcgcaacatgggcatcgcccgggacctgggt
tacctgcgggttccgcccggcctcgtggtggacgtgcgcacgctcgacgatctccccgac
cgcgaggtggtgctggtctgcaccggctcccagggcgagcccatggcggccctgtcccgg
atggccaaccgcgaccaccagatccgcatcgtcgagggcgacacggtcatcctcgcctcc
tcgctgatccccgggaacgagaacgccgtctaccgggtcatcaacgggctcacccggtgg
ggcgccaacgtcgtccacaagggcaacgccaaggtccacgtctccgggcacgcctcggcc
ggcgagctgctgtacttctacaacatctgccgcccccgcaacctgatgccggtgcacggc
gaatggcgccacctgcgcgccaacgcggaactcggcgccctgaccggggtgccggccgac
cggatcgtcatcgcggaggacggcgtcgtcgtcgacctggtcaagggcaaggcgaagatc
gtcggcaaggtccaggccggctacgtgtacgtggacggcctgtccgtcggcggcgtcacc
gaggccagcctgaaggatcggcggatcctcggcgacgagggcttcatctccgtcttcgtg
gtcgtggacagcagcaccggcaagatcgtcagcggcccgagcatccactcccggggctcc
ggcatcgacgacgcggccttcgccgaggtcatcccgaagatcgacgaggccctggccaag
tccgcccaggacggggtcgtcgaggcccaccagctgcagcagctggtgcgccgtacggtc
ggcaagtgggtgtcggacgtctaccgccggcgtccgatgatcatgccggtcgtggtcgag
gtctga

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