Streptomyces harbinensis: HUT13_22580
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Entry
HUT13_22580 CDS
T07389
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
shar
Streptomyces harbinensis
Brite
KEGG Orthology (KO) [BR:
shar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shar03009
]
HUT13_22580 (rimO)
Enzymes [BR:
shar01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
HUT13_22580 (rimO)
Ribosome biogenesis [BR:
shar03009
]
Prokaryotic type
ribosomal protein modification factors
HUT13_22580 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
YajR_YAM
Motif
Other DBs
NCBI-ProteinID:
QKV71235
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Position
4951427..4952944
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AA seq
505 aa
AA seq
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MSDRRTVALVTLGCARNEVDSEELAGRLAADGWDLVEDAADADVAVVNTCGFVEAAKKDS
VDALLEAGELKTAAGEGRGRTQAVVAVGCMAERYGKELAQALPEADGVLGFDDYADISER
LNAILSGGGHVSHTPRDRRKLLPISPVERQGAAVALPGHGESAPADLPAGLAPASGPRAP
LRRRLDGGPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGEARWLAEQGVKEIML
VSENNTSYGKDLGDIRLLETLLPELAAVDGLERIRVSYLQPAEMRPGLIDVLTGTEKVAP
YFDLSFQHSAPDVLRAMRRFGDTDRFLELLATIRGKAPQAGVRSNFIVGFPGETEADLAE
LERFLIGADLDAIGVFGYSDEDGTEAASYPDKNAPEVVAERLERITQLAEQLTAQRAEDR
IGERARVLIESVAAEDGAEDGVIAVGRAAHQAPETDGQMLITGAPGDPVPQVGTFVDTEI
TGAEGVDLFAEPSPAAVPVPAGADR
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcgccgtaccgttgccctggtcacccttggatgcgcccgtaatgaggtggat
tcggaagagctggcggggcggctggccgcagacggctgggacctggtcgaggacgccgcg
gacgcggatgtcgccgtggtcaacacctgcggcttcgtcgaggccgcgaagaaggactcg
gtggacgccctgctggaggccggcgagctgaagacggctgccggtgagggccggggccgt
acccaggccgtcgtggcggtcggctgcatggccgagcggtacggcaaggagctggcccag
gcgctgcccgaggcggacggggtgctcggcttcgacgactacgcggacatctccgagcgg
ctgaacgccatcctcagcggcggcggccatgtgtcgcacactccccgggaccggcgcaag
ctgctgccgatcagccccgtcgagcggcagggcgccgcggtggcgctgcccgggcacggg
gagagcgccccggcggatctgccggccgggctcgcgccggcctccgggccgcgggcgccg
ctgcgccgccggctggacggcgggcccgtcgcgtcggtgaagctcgcctcgggctgcgac
cggcggtgctcgttctgcgcgatcccgtccttccgcggctcgttcatctcccgccgcccc
tccgatgtgctgggcgaggcgcgctggctggccgagcagggcgtcaaggagatcatgctg
gtctccgagaacaacacctcctatggcaaggacctcggcgacatccggctgctggagacc
ctgctgcccgaactcgccgccgtggacggcctggagcggatccgggtgagctacctccag
cccgccgagatgcggccggggctgatcgacgtgctcaccggcaccgagaaggtcgccccc
tacttcgatctgtccttccagcactcggcgcccgatgtgctgcgcgccatgcggcggttc
ggggacaccgaccgcttcctggaactgctggccaccatccggggcaaggccccgcaggcc
ggggtccgttcgaacttcatcgtgggcttccccggggagaccgaagccgatctggccgag
ctggagcgctttctgatcggtgcggatctggacgcgatcggggtcttcggatactccgac
gaggacggcacggaagccgcctcgtacccggacaagaacgcgcccgaggtggtcgccgag
cggctggaacgcatcacccagctggccgaacagctgaccgcccagcgcgccgaggaccgc
atcggtgaacgggcccgggtgctgatcgagtcggtggcggccgaggacggcgccgaggac
ggggtgatcgcggtcggccgcgccgcccaccaggcgcccgagaccgacggccagatgctg
atcaccggcgcgcccggcgacccggtgccgcaggtcggcaccttcgtggacaccgagatc
accggcgccgagggagtggacctgttcgccgagccgagccccgccgccgtccccgtaccg
gccggggcggacagatga
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