Streptomyces harbinensis: HUT13_22815
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Entry
HUT13_22815 CDS
T07389
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
shar
Streptomyces harbinensis
Pathway
shar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUT13_22815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shar03019
]
HUT13_22815
03400 DNA repair and recombination proteins [BR:
shar03400
]
HUT13_22815
Enzymes [BR:
shar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HUT13_22815
Messenger RNA biogenesis [BR:
shar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUT13_22815
DNA repair and recombination proteins [BR:
shar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HUT13_22815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
QKV71277
LinkDB
All DBs
Position
complement(5008309..5010513)
Genome browser
AA seq
734 aa
AA seq
DB search
MEQQTTPGSTPPAPTDTEDLRTAADTVLARLVGDPTGAARLRPDQWRAVEALVAHRRRAL
VVQRTGWGKSAVYFVATALLRARGDGPTVIISPLLALMRNQIDAARRAGIAARTINSANP
QEWADIRAEVAAGDVDVLLVSPERLNSPDFRDDVLPELASSTGLLVVDEAHCISDWGHDF
RPDYRRLRTLLSELPAGVPVLATTATANARVTADVAEQLETGGGPDGGTLVLRGPLERES
LRLSVLRLPDAAHRLAWLDGHLEQLPGSGIIYTLTVAAAEEVTAYLRARGHRVASYTGRT
ENADREAAEADLLANRVKALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQIGRAGRA
LDQAEVLLLPGPEDEAIWRYFASLAFPPEEQVRHTLAVLAEAGAPMSLPALEPRVDLRRS
RLETMLKVLDVDGAVRRVRGGWAATGAPWEYDTERYAWVARQRAAEQQAMRDYVTAAGCR
MEFLRGQLDDPQATPCGRCDNCAGARFDAVVAPDALAAAHGELTRPGTAVEPRRMWPTGL
PSIGLDLKGRIPPDEQAAAGRALGRLSDIGWGNRLRPLLAPGAADAPVPDDVAHAVVTVL
ADWAKGRGGWASGEPEATPRPVGVVVLDSRSRPRLVHSLGERIATVGRLPLLGSVRHSGE
AGRSAPGNSAQRLRALHGSLELPAPLSEALRSAGGPVLLVDDYTESGWTLAVAARLLRRA
GASAVLPLVLAVQG
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggagcagcagaccaccccgggatccaccccgcccgccccgaccgacaccgaggacctg
cgcacggcggccgacaccgtcctcgcgcggctggtgggcgaccccaccggcgccgcccgg
ctgcgccccgaccagtggcgcgccgtggaggccctggtggcccaccggcgccgggccctg
gtcgtccagcgcaccggctgggggaagtccgccgtctacttcgtggccaccgcgctgctg
cgcgcacggggcgacggccccactgtgatcatctcgccgctgctcgccctcatgcgcaac
cagatcgacgccgcccgccgggccggtatcgcggcccgcaccatcaactccgccaacccc
caggagtgggccgacatccgcgcggaggtcgcggcaggcgacgtcgacgtcctgctggtc
tcccccgagcggctcaactcacccgacttccgtgacgacgtccttcccgaactcgcctcc
tccaccggcctgctggtcgtcgacgaggcgcactgcatctccgactggggacacgacttc
cgtcccgactaccggcggctgcgcaccctgctgtccgagctgcccgccggggtgccggtg
ctggccaccaccgcgaccgccaacgcccgcgtcaccgccgacgtcgccgaacaactggag
accggcggcggccccgacggcggcaccctcgtactgcgcggcccgctggaacgcgagagc
ctgcggctttccgtcctgcgcctgcccgacgccgcccaccggctcgcctggctcgacgga
catctggagcagctgccgggatccggcatcatctacaccctcaccgtcgccgccgccgag
gaggtcaccgcctacctgcgcgcccgcggccaccgggtcgcctcctacaccggccgcacc
gagaacgccgaccgcgaggccgccgaggccgacctgctcgccaaccgggtcaaggccctc
gtcgccacctcggcgctcggcatgggattcgacaaacccgatctcggcttcgtcgtccac
ctgggctccccctcctcccccatcgcctactaccagcagatcggccgcgccggacgcgcc
ctcgaccaggccgaggtgctactgctccccggcccggaggacgaggcgatctggcggtac
ttcgcctccctggccttccctcccgaggaacaggtccggcacaccctggcggtcctggcc
gaggcgggagcgccgatgtccctccccgcgctggaaccgcgcgtcgatctgcgccgctcc
cggctggagacgatgctcaaggtgctcgacgtggacggcgcggtacgccgcgtacgcggc
ggctgggccgccaccggagccccctgggagtacgacacggagcgctacgcctgggtggcc
cggcagcgcgccgccgagcagcaggccatgcgcgactacgtcacggcggccggctgccgg
atggaattcctgcgcggccagctggacgatccgcaggccaccccgtgcgggcggtgcgac
aactgcgcgggcgcccggttcgacgcggtcgtcgcaccggacgcgctggccgccgcgcac
ggcgagctcacccgccccggcaccgccgtggaaccgcgccggatgtggcccaccggactg
ccctcgatcggtctcgacctcaagggccgtatcccgcccgacgagcaggccgccgccgga
cgggccctgggccggctctccgacatcggctggggcaaccggctgcgcccgctgctcgcc
cccggtgccgccgacgccccggtgccggacgacgtggcgcacgccgtggtcaccgtgctg
gccgactgggcgaagggccgcggtggctgggccagtggtgaaccggaggccacgcccagg
ccggtcggggtggtcgtcctcgattcccgctcccggccgcgcctcgtgcactccctgggc
gaacgcatcgccaccgtgggccggctcccgctgctgggcagcgtgcggcactccggggaa
gccgggcggtccgcacccggcaacagcgcccagcggctgcgcgccctgcacggctccctg
gaactgccggccccgctcagcgaggccctgcgctcggccggcggccctgtgctgctggtc
gacgactacaccgaatccggctggaccctggccgtggccgcccggctgctgcgccgcgcc
ggcgcctccgcggtactccccctggtcctggcggtgcagggatga
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