Streptomyces harbinensis: HUT13_25560
Help
Entry
HUT13_25560 CDS
T07389
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
shar
Streptomyces harbinensis
Brite
KEGG Orthology (KO) [BR:
shar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
shar03016
]
HUT13_25560
Enzymes [BR:
shar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HUT13_25560
Transfer RNA biogenesis [BR:
shar03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HUT13_25560
Prokaryotic type
tRNA splicing ligases
HUT13_25560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QKV71764
UniProt:
A0A7H8H5L5
LinkDB
All DBs
Position
5654749..5655942
Genome browser
AA seq
397 aa
AA seq
DB search
MGYTEVPGARVPIRMWADPATVEDGAMRQLRNVTTLPWVEGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMTAVRTSLTASDLPGDLSRLRSRIEETIPVGFRTHKDPVDPA
RVYGLKGAGWDDFWSGFGGIAEQVRFRRERAGLQMGTLGGGNHFIEVCVDTEDAVWLMLH
SGSRNIGKELAEFHIGVAQNLPHNQGLVDRDLAVFIADTPQMAAYRHDLFWAQEYARRNR
EVMMGLLRNVIIKEFGKARPTFGEVISCHHNYVAEERYEGVDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNTDSFRSASHGAGRRMSRNQAKKRFTTRDLAEQTRGVECRKDAG
VVDEIPGAYKPIEQVIDAQRDLVEVVARLRQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgggatacaccgaagtgcccggggcacgggtaccgatccggatgtgggcggaccccgcg
accgtcgaggacggcgccatgcgccagctgcggaacgtgacgacgcttccgtgggtcgag
ggcctggccgtcatgcccgatgtgcactacggaaaaggtgccacggtcggctcggtgatc
gccatgcgcggcgcggtctgcccggccgccgtcggggtggacatcggctgcggcatgacc
gccgtgcggacctccctgaccgcctcggacctgcccggtgacctgtcccggctgcgctcg
cgcatcgaggagaccatcccggtcggcttccggacgcacaaggacccggtggacccggcc
cgtgtctacggcctgaagggcgccggctgggacgacttctggtccggtttcgggggcatc
gcggagcaggtgcgcttccggcgtgagcgggccggcctccagatgggaaccctgggtggc
ggcaatcatttcatcgaagtgtgcgtggacaccgaggacgcggtctggctgatgctgcac
tcggggtcccgcaatatcggtaaggaactggccgagttccacatcggagtggcccagaat
ctgccgcacaatcagggcctggtcgatcgcgacctggccgtcttcatcgcggacaccccg
cagatggccgcctaccggcacgacctgttctgggcgcaggaatacgcccggcgcaatcgg
gaggtgatgatggggctgctgcgcaatgtgatcatcaaggagttcgggaaggccaggccc
actttcggcgaggtcatctcctgccaccacaactatgtcgccgaggagcggtacgagggg
gtggacctgctggtcacccgcaagggagcgatccgggccggcagcggcgagtacgggatc
atccccggatcgatgggcaccggctcgtacatcgtcaagggcctgggcaacaccgactcc
ttccgctccgcctcgcacggcgcgggccggcggatgagccgcaaccaggcgaagaagcgg
ttcaccacccgggacctggccgagcagacccggggcgtggagtgccgcaaggacgccggg
gtggtggacgagatccccggcgcctacaagccgatcgagcaggtcatcgacgcccagcgg
gacctcgtcgaggtggtggcgcggctgcggcaggtggtgtgcgtcaagggctga
DBGET
integrated database retrieval system
