Streptomyces halobius: K9S39_00365
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Entry
K9S39_00365 CDS
T09588
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
shau
Streptomyces halobius
Pathway
shau03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K9S39_00365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shau03400
]
K9S39_00365
Enzymes [BR:
shau01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
K9S39_00365
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
K9S39_00365
DNA repair and recombination proteins [BR:
shau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
K9S39_00365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-ProteinID:
UQA90560
LinkDB
All DBs
Position
71284..72048
Genome browser
AA seq
254 aa
AA seq
DB search
MPELPDVEGFREILASCARGRRIKRVEVMDADVLHGAGARRLARELTGRRLAEPERHGKW
LLVRTDGPTVLLHFGMTGLLLCCDADEPRHRHDRVVLTVDGHELRYRDQRKLRGLWPDDP
DRVLSDQGPDAMDLGLADFRELLSARRGGLKSALMNQSLLAGLGNLTADEILWRARLRPS
RAASGLTGEEVRRLHARLRSVLRSSIRVGQIPPRPSWLTGHRDDADPHCPRCDGRLRRDR
IAGRTAVWCPACQR
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctgcctgacgtcgagggattccgggaaatcctggcctcctgtgcgcgcggc
cgccggatcaagcgggtcgaagtcatggacgccgacgtgttgcacggagcgggcgcccgg
aggctggcccgtgagctgaccggccgccgcctcgccgagccggagcggcacggcaagtgg
ctgctcgtccgcaccgacggtcccaccgtgctccttcacttcggcatgaccggtctgctg
ctctgctgcgacgccgacgagccgcgccaccggcacgaccgggtcgttctcaccgtcgac
ggccacgagctccgctaccgcgatcagcgcaagctgcgcggcctgtggcccgacgatccc
gaccgcgtactgagcgaccagggcccggacgcgatggacctcggcctcgcggacttcagg
gagctgctctcagcccggcggggcgggctgaagtcggcgctgatgaaccagtcgctgctc
gccgggctcggcaacctgaccgccgacgagatcctgtggcgagcccggctgcgcccctcc
cgtgccgcttccgggctcaccggcgaggaggtgcggcgcctgcacgcacggctgcgcagc
gtcctgcgctcctcgatacgcgtcggccagatcccgccgaggcccagctggctgaccggg
caccgcgacgacgcggacccgcactgcccgcgctgcgacggccggctgcgccgcgaccgc
atcgccggccgcacggcggtgtggtgcccggcgtgccagcgctga
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