Streptomyces halobius: K9S39_10985
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Entry
K9S39_10985 CDS
T09588
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
shau
Streptomyces halobius
Pathway
shau03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
shau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K9S39_10985 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shau03400
]
K9S39_10985 (ligD)
Enzymes [BR:
shau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K9S39_10985 (ligD)
DNA repair and recombination proteins [BR:
shau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K9S39_10985 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
UQA92297
LinkDB
All DBs
Position
2301574..2302545
Genome browser
AA seq
323 aa
AA seq
DB search
MAPTAERGFAPYPVIRPMLAAVGPLPAEGDDAAWAFEAKWDGARCIINTPGDGTIRLITR
AGNDATMTYPELGALGEQLRGPPAVLDGEVVVLDAQGRPDFGLLQRRMGVVNPRRTARLA
MEHPVHLVLFDVMYLGRSLLDAPYHERRSVLYGLDLRGPNWSVPAHMEGHGRQAWEASLR
SGIEGVVAKKLNSVYTPGVRSPDWRKTKHVQTLDVIIGGWAEGRGGLAGLPGAVLVGVED
PLGLRYVGSVGSGLSDRERRDLAQYLSVIARAESPFINPVDVPGAHWAEPRLVAEITFSG
WTSADRLRHPIWHRLRPDLTRLG
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggcccccaccgccgagcgcggcttcgccccgtaccccgtgatccggccgatgctggcc
gccgtcgggccgctgcccgccgagggcgacgacgcggcatgggcgttcgaggccaaatgg
gacggggcgcgctgcatcatcaacacaccgggcgacgggacgatccggctgatcacccgg
gccggcaacgacgcgacgatgacgtaccccgagctcggcgccctcggtgaacagctgcgc
ggcccgcccgccgttctcgacggcgaagtggtggtgctggacgcgcagggccggcccgac
ttcgggctgctgcagcgccggatgggcgtggtcaatccgcgccgcaccgcccgtctggcc
atggagcatcccgtccatctcgtgctgttcgacgtgatgtacctggggcgttcgctgctc
gacgcgccgtaccacgagcgccggtccgtgctctacgggctggacctgcgcggtccgaac
tggtcggtgcccgcacatatggagggtcacggccggcaggcatgggaggcgtcgttgcgg
agcggcatcgagggggtggtggcgaagaagctgaactccgtttacacccccggggtccgg
tcacccgactggcgcaagacgaagcatgtgcagacgctggacgtgatcatcggcggctgg
gcggaaggccgcggcggactcgccgggctgccgggggcggtcctggtcggcgtcgaggac
ccgttggggctgcggtacgtgggctccgtcgggtcgggcctctccgaccgcgagcggcgt
gacctcgcccagtacctgagcgtgatcgcccgcgcagagtcccccttcatcaaccccgtg
gacgtcccgggcgcgcactgggccgagccccggctcgtcgcggagatcaccttctccggc
tggacctcggccgaccggctgcggcatccgatctggcaccggctgcggccggatctgacg
cgcttgggctga
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