Streptomyces halobius: K9S39_13335
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Entry
K9S39_13335 CDS
T09588
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
shau
Streptomyces halobius
Pathway
shau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K9S39_13335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shau03019
]
K9S39_13335
03400 DNA repair and recombination proteins [BR:
shau03400
]
K9S39_13335
Enzymes [BR:
shau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K9S39_13335
Messenger RNA biogenesis [BR:
shau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K9S39_13335
DNA repair and recombination proteins [BR:
shau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K9S39_13335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
AAA_30
RecQ_Zn_bind
DUF8096
PglZ_C
Motif
Other DBs
NCBI-ProteinID:
UQA92679
UniProt:
A0ABY4M4J3
LinkDB
All DBs
Position
2884117..2886279
Genome browser
AA seq
720 aa
AA seq
DB search
MSDEELRASADAVLTRLVGDPGGGARLREDQWRAIEALVADRRRALVVQRTGWGKSAVYF
VATALLRERGSGPTVIISPLLALMRNQVEAAARAGIHARTINSSNTEEWDTVQAEVAAGE
VDVLLVSPERLNNPDFRDQVLPKLAAATGLLVVDEAHCISDWGHDFRPDYRRLRTVLADL
PPGVPVLATTATANARVTADVAEQLGTGDAAEALVLRGPLDRESLSLGVLPLPDAAHRLA
WLADHLQELPGSGIIYTLTVAAAEEVTAFLRHRGHTVSSYTGKTENADRQQAEDDLLANR
VKALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVKHAEVLLLPGREDEA
IWKYFASLAFPSEEQVRQTLDVLAAAGRPVSLPALEPRVELRRSRLEIMLKVLDVDGAVR
RVKGGWTATGRPWSYDAERYAWVTRQREAEQQAMREYAGTTGCRMEFLRRQLDDEAAMPC
GRCDNCAGARFSTEVSAASLDAARGELGRPGVEVEPRRMWPTGLPAIGLDLKGRIPAGEL
AATGRALGRLSDIGWGNRLRPMLAPQAPDGPVPDEVSAAVVTVLADWAKGPGGWASGEDD
APARPVGVVCLASRTRPQLIRSLAERLASVGRMPFLGTVASVDDGADGRIPRSNSAQRLR
ALHGSLSVPPELARALESAGGPVLLVDDYADTGWTLAVAARLLRRAGAEGVFPLVLAVQG
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgaagagctgcgtgcctcggccgatgccgtcctgacccgactcgtcggcgat
cccggcggcggggcccggctgcgcgaggaccagtggcgggcgatcgaggcgctggtcgcc
gaccgccgccgtgccctggtcgtgcagcgcacgggctggggaaagtccgcggtctatttc
gtggcgacggcgctgctgcgcgagcgcggcagcggaccgaccgtgatcatctccccgctg
ctcgcgctgatgcgcaaccaggtggaggcggccgcgcgggccgggatccacgcgcgcacg
atcaactcgtccaacaccgaggaatgggacaccgttcaggccgaggtggcggccggcgag
gtggatgtcctgctggtgagtcccgagcggctcaacaaccccgatttccgcgatcaggtg
ctgcccaaactcgcggcggccaccggcctgctggtggtcgacgaggcacactgcatctcc
gactggggccacgatttccggccggattaccggcggctgcgcacagtgctcgccgacctc
ccgcccggtgtcccggtgctcgccacgacggccacggccaacgcccgggtgacggccgat
gtcgccgagcagctggggacgggtgacgccgccgaggccctggtcctgcgcggcccgctg
gaccgggagagcctgagcctgggcgtgctgccgctcccggacgccgcgcaccggctcgcc
tggctcgcggaccatctgcaggagcttccgggttcggggatcatctacacgctcaccgtc
gccgccgccgaggaggtcacggctttcctgcggcaccggggccacacggtctcctcgtac
accggcaagacggagaacgccgaccgccagcaggccgaggacgatctcctcgccaaccgc
gtgaaggcgctcgtggcgacgtccgcgctgggcatgggcttcgacaagcccgacctgggg
ttcgtggtgcatctggggtcgccgtcctcccccatcgcctactaccagcaggtggggcgc
gcggggcgtggggtgaagcacgccgaggtgctgctgctgccgggccgcgaggacgaggcg
atctggaagtacttcgcgtcgctggccttcccgtccgaggagcaggtgcgccagacgctg
gacgtcctggcggccgcgggccggccggtgtcgctgccggccctggagccgcgggtcgaa
ctgcgccggtcccgcctggagatcatgctcaaggtgctcgatgtggacggcgcggtgcgt
cgcgtcaagggcggctggacggccaccggccgcccgtggtcgtacgacgcggagcgctat
gcgtgggtgacccgtcagcgcgaggccgaacagcaggcgatgcgggagtacgccggcacg
acgggctgccggatggagtttctgcggcggcagttggacgacgaagcggccatgccgtgc
ggtcgctgcgacaactgcgcgggggccaggttcagcaccgaggtgtccgccgcctcattg
gacgccgcgcgcggcgagctggggcgccccggtgtggaggtggagccgcggcggatgtgg
ccgacggggctgccggccatcggcctcgacctcaaggggcgtatcccggcaggtgagttg
gccgcgacgggccgtgcgctgggccggctgtccgacatcgggtggggcaaccggcttcgc
ccgatgctcgcaccgcaggcaccggacggcccggtccccgatgaggtatcggccgcggtg
gtcacggtcctcgccgactgggccaaaggacccggtggttgggcctctggagaagacgac
gcaccggcccgcccagtgggcgtcgtctgcctcgcgtcgcgtacccgcccgcagttgatc
cggtcgctcgccgaacggctcgcgtcggtcggcaggatgccgttcctggggacggtggcc
tcggtggacgacggagcggacggcaggattccgcgcagcaacagcgctcagcggctgcgg
gccctgcacggttcgctgagcgtgccaccggagttggcgcgggccctggagtcggccggc
ggcccggtgctcctggtggacgactacgccgacaccggctggacgctggccgtggccgcc
cggctgctgcgccgggcgggagccgagggggtgtttccgctggtcctcgccgtacagggg
taa
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