Streptomyces halobius: K9S39_21025
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Entry
K9S39_21025 CDS
T09588
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
shau
Streptomyces halobius
Brite
KEGG Orthology (KO) [BR:
shau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shau03032
]
K9S39_21025 (topA)
03400 DNA repair and recombination proteins [BR:
shau03400
]
K9S39_21025 (topA)
Enzymes [BR:
shau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
K9S39_21025 (topA)
DNA replication proteins [BR:
shau03032
]
Prokaryotic type
DNA Topoisomerases
K9S39_21025 (topA)
DNA repair and recombination proteins [BR:
shau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
K9S39_21025 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UQA94022
LinkDB
All DBs
Position
complement(4614061..4616910)
Genome browser
AA seq
949 aa
AA seq
DB search
MSPTSETAKGGRRLVIVESPAKAKTIKGYLGPGYVVEASVGHIRDLPNGAAEVPAKYKGE
SWARLGVNVESDFEPIYVVNSDKRDQVKKLKELLAESDELFLATDEDREGEAIAWHLQEI
LKPKVPVHRMVFHEITKDAIREAVANPRDLNQKLVDAQETRRILDRLYGYEVSPVLWKKV
MPRLSAGRVQSVATRLVVERERERIAFRSAEYWDLTGTFATGRAGDASDPSALAARLTTV
DGRRVAQGRDFGANGQLKNTDVLHLDEANARALAAALESTDFTVRSVESKPYRRSPYAPF
RTTTLQQEASRKLGFGAKVTMQVAQKLYENGYITYMRTDSTTLSGAAIAAARRQVTQLYG
AGYLPDKPRTYAGKVKNAQEAHEAIRPSGDRFRTPAETGLTGDQFRLYELIWKRTVASQM
KDATGNSVTVKIGGTASDGRDAEFSASGKTITFHGFLKAYVEGADDPNAELDDRERRLPQ
VAEGDALSAREITVDGHATKPPARYTEPTLTKELEEREIGRPSTYVSILGTILDRGYVFK
KGTALVPSFLSFAVVNLLEKHFGRLIDYGFTAKMEDDLDRIARGEAQAVPWLRRFYFGEG
EAAGAASEAGNGDGDHFGGLKELVEDLGAIDAREISSFPVGDDIKLRVGRYGPYVERGEK
DAEGHQRADVPDDLAPDELTVEYAEELLAKPSGDFELGRDPVSGHQIVAKDGRYGPYVTE
ILPEGTPKTGKNAVKPRTASLFKSMSLDTVTLEDALKLMSLPRVVGKDAEGVEITAQNGR
YGPYLKKGTDSRSLESEEQIFTITLDEALAIYAQPKVRGRAAAKPPLKELGTDPVSGKPV
VVKDGRFGAYVTDGETNATLRRDDDVEAITAERGYELLAEKRAKGPAKKKTAKKAPAKKT
AAKKTAAKKTVAKKTAAKKTAAKKTTTAKKTTAKKTATAARKTAASAED
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
ttgtccccgaccagcgagaccgcaaagggcggccgccgactcgtcatcgtcgagtcgcct
gccaaggcgaagacgatcaagggctacctcggccccggctatgtcgtcgaggccagcgtc
gggcacatccgcgaccttcccaacggtgcggcagaggtcccggcgaagtacaagggcgag
tcgtgggcccgtctcggtgtgaacgtcgagtccgacttcgagccgatctatgtggtcaac
agcgacaagagggaccaggtcaaaaagctcaaggagctgctggccgagtccgacgaactc
ttcctcgccaccgatgaggaccgcgagggcgaggccatcgcctggcacctgcaggagatc
ctcaagcccaaggtcccggtccaccggatggtcttccacgagatcaccaaggacgcgatc
cgtgaggccgtcgccaacccgcgcgacctgaaccagaagctggtcgacgcccaggagacc
cgccgtatcctcgaccgcctctatggctacgaggtctcgccggtgctgtggaagaaggtc
atgccgcggctgtcggcgggccgggtgcagtccgtcgcgacccgtctcgtcgtcgagcgg
gagcgcgagcgcatcgccttccgttccgccgagtactgggacctgaccggcacctttgcc
acgggacgagcgggtgacgccagcgatccgtccgccctcgccgcccgtctgaccacggtc
gacggccgccgtgtcgcgcagggccgtgacttcggcgccaacgggcagctgaagaacacc
gacgtcctgcacctggacgaggccaacgcccgcgcgctggccgccgccctggagagcacc
gacttcaccgtccggtccgtcgagtccaagccgtaccgccgctccccgtacgccccgttc
cgtacgaccaccctccagcaggaggccagccgcaagctcggcttcggcgccaaggtcacg
atgcaggtcgcgcagaagctgtacgagaacggctacatcacctatatgcgtacggactcc
accacgctctcgggcgccgcgatcgccgcggcccggaggcaggtgacgcagctgtacggc
gccggctatctgccggacaagccgcgcacgtacgccggcaaggtcaagaacgcgcaggag
gcgcacgaggcgatccgtccctccggcgaccgcttccgcaccccggcggagaccggactg
accggcgaccagttccggctctacgaactgatctggaagcggaccgtcgcttcccagatg
aaggacgcgacgggcaactccgtcaccgtcaagatcggcggtacggcgagcgacggccgg
gacgccgagttcagcgcgtccggcaagacgatcaccttccacggtttcctgaaggcgtac
gtggagggcgcggacgacccgaacgccgagctggacgaccgcgagcggcggctgccgcag
gtcgccgagggcgacgcgctgtccgcgcgggagatcaccgtcgacgggcacgccaccaag
ccgcccgcccgttacaccgagcccacgctgaccaaggagctggaggagcgggagatcggc
cgtccgtcgacgtatgtgtcgatcctcggcaccattctcgaccgcggctatgtcttcaag
aagggcaccgcgctcgtcccgtcgttcctctccttcgccgtggtcaacctcctggagaag
cacttcggccggctgatcgactacggcttcaccgccaagatggaggacgacctcgaccgc
atcgcgcggggtgaggcgcaggccgtgccgtggctgcggcgcttctacttcggcgagggg
gaggccgcgggggccgcgtcggaggccggcaacggcgacggcgaccacttcggcgggctg
aaggagctggtcgaggacctgggcgcgatcgacgcccgggagatctcgtccttccccgtc
ggcgacgacatcaagctgcgggtcggccgctacggcccgtacgtcgagcgcggggagaag
gacgccgaggggcatcagcgcgctgatgtccccgacgatctcgcgcccgacgagctgacc
gtggagtacgccgaggagctgctggccaagccgagcggcgacttcgagctgggcagggac
ccggtgagcggccaccagatcgtggcgaaggacggccgctacggcccgtacgtcaccgag
atcctgcccgaaggcaccccgaagaccggcaagaacgcggtcaagccgcggaccgcctcg
ctcttcaagtcgatgtccctggacacggtgacccttgaggacgcgctgaagctgatgtcg
ctgccgcgcgtcgtcggcaaggacgccgagggcgtggagatcaccgcgcagaacggccgc
tacggcccgtacctcaagaagggcaccgactcgcgctccctggagagcgaggagcagatc
ttcaccatcaccctggacgaggcgctggcgatctacgcgcagcccaaggtccgcggccgg
gcggccgccaagccgccgctcaaggagctgggcaccgacccggtgagcggcaagccggtg
gtggtcaaggacggccggttcggcgcgtacgtcaccgacggcgagaccaatgcgacgctg
cggcgcgacgacgacgtcgaggcgatcaccgccgagcgcggctacgagctgctggcggag
aagcgcgccaaggggccggcgaagaagaagacggccaagaaggcgccggccaagaagacg
gcggcgaagaagacggccgccaagaagaccgtggcgaagaagacggccgccaagaagacc
gcggcgaagaagaccaccacggccaagaagacgaccgcgaagaaaaccgctacggcggcg
cggaagacggcggcttcggcggaggactga
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