Streptomyces halobius: K9S39_21890
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Entry
K9S39_21890 CDS
T09588
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
shau
Streptomyces halobius
Brite
KEGG Orthology (KO) [BR:
shau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shau03021
]
K9S39_21890
Transcription machinery [BR:
shau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K9S39_21890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_Crp_2
HTH_23
MarR
DUF7343
HTH_3
Sigma70_ECF
HTH_24
HTH_31
DUF134
Motif
Other DBs
NCBI-ProteinID:
UQA94166
LinkDB
All DBs
Position
4795620..4796456
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AA seq
278 aa
AA seq
DB search
MSVELGSSKVLAAIPAPAPHVHDDDSINTRTLSRSLFLRLATLDKDCAERTYVRDTLIEL
NLPLVRYAAARFRSRNEPMEDIVQVGTIGLIKAIDRFDCERGVEFPTFAMPTVVGEIKRF
FRDTSWSVRVPRRLQELRLALTKASDELAQQLDRSPTVPELAMCLGVSEEDVVDGLAVGN
AYTASSLDSPSPEDDGSEGSLADRLGYEDSALEGVEYRESLKPLLAKLPARERQIIMLRF
FANMTQSQIGEEVGISQMHVSRLLTRTLAQLREGLISD
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtagaactgggcagctcgaaggtgcttgccgcgattcccgcgcctgcgccacac
gtgcatgacgacgactccatcaacacccgcacgctctcccgctccctcttcctgcggctg
gccacgctcgacaaggactgcgcggagcgtacgtacgtccgcgacaccctgatcgaactc
aacctcccgctcgtgcgctacgccgcggcacggttccgcagccgcaacgaaccgatggag
gacatcgtccaggtcggcacgatcggactgatcaaggcgatcgaccgtttcgattgcgaa
cgcggggtggaattcccgacgttcgcgatgccgaccgtcgtcggcgagatcaagcgcttc
ttccgcgacacgtcctggtcggtacgggtaccacgccgcctccaggagctccggctcgcc
ctcaccaaggccagcgacgagctcgcccagcagctggaccgctcgccgacggtgcccgaa
ctggccatgtgcctgggggtgtcggaggaggacgtcgtcgacggcctggcggtcggcaac
gcctacaccgcctcctccctcgactccccgtcccccgaggacgacggcagcgagggctcc
ctcgcggaccgcctcggctacgaggactccgcgctggagggcgtcgagtaccgcgaatcc
ctcaagcccctgctggccaaactcccggcccgtgaacggcagatcatcatgctccggttc
ttcgccaacatgacgcagtcacagatcggcgaggaggtcggcatctcccagatgcatgtc
tcccggctgctcacccgcacgctcgcgcagctgcgcgaaggtcttatctcagactga
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