Streptomyces halobius: K9S39_24530
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Entry
K9S39_24530 CDS
T09588
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
shau
Streptomyces halobius
Brite
KEGG Orthology (KO) [BR:
shau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
shau03016
]
K9S39_24530
Enzymes [BR:
shau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
K9S39_24530
Transfer RNA biogenesis [BR:
shau03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
K9S39_24530
Prokaryotic type
tRNA splicing ligases
K9S39_24530
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF7857
Motif
Other DBs
NCBI-ProteinID:
UQA94599
UniProt:
A0ABY4M9Y1
LinkDB
All DBs
Position
5376184..5377377
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AA seq
397 aa
AA seq
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MSYTEVPGAQVPIRMWTDPSTVEGVAMQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMHGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMHDDPVDPG
RMHGFPTAGWDDFWARFDGVADAVKFRLERATKQMGSLGSGNHFWEFCIDSDQSVWIMLH
SGSRNIGKELAEYHMGVAQKLPQNQGLVDRDLAVFIADTPQMAAYRNDLFWAQEYAKHNR
AIMMALSQDVIRKEFKKARVTFGEVISCHHNYVAEERYDGMDLLVTRKGAIRVGSGEYGI
IPGSMGTGSYIVRGLGNAASFHSASHGAGRKMSRNAAKKRFSTRDLEEQTRGVECRKDSG
VIDEIPGAYKPIEKVIDQQRDLVEVVAHLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaccgaagtgcccggtgcccaggtgccgatccggatgtggacggacccgtcc
acggtcgagggcgtcgcgatgcagcagctgcgcaatgtcgccacgctgccgtggatcaag
ggcctggccgtgatgccggatgtgcactacggcaagggggccaccgtcggctcggtgatc
gcgatgcacggcgcggtctgcccggcggcggtcggtgtcgacatcggctgcggaatgagc
gcggtgaagacgtcactgaccgctaatgatctcccgggcgatctgtcccggctgcgctcg
aagatcgagcaggcgatcccggtcggccgtgggatgcacgacgatccggtcgacccgggg
cggatgcacggcttcccgaccgccgggtgggacgacttctgggcgcggttcgacggggtg
gccgatgcggtcaagttccgtctggaacgggctacgaagcagatgggttcgctcggatcc
ggaaatcatttttgggaattttgtatcgattctgatcaatctgtatggattatgttgcac
tccggatcgcgcaacatcggcaaggagctggccgagtaccacatgggcgtggcccagaag
ctgccgcagaaccaggggttggtcgaccgggacctcgccgtcttcatcgcggacaccccg
cagatggcggcgtaccgaaacgatctgttctgggcgcaggagtacgcgaagcacaaccgc
gcgatcatgatggcgctttcacaggacgtgattcgcaaggagttcaagaaggcgagggtg
accttcggagaggtcatctcctgccaccacaactatgtggcggaggagcggtacgacggc
atggacctgctggtgacccgtaagggcgcgatccgggtgggcagtggcgagtacggcatc
attccgggctcgatgggcaccggttcgtacatcgtccgtggtctggggaatgccgcgagt
ttccactcggcctcgcacggcgcgggtcggaaaatgagcaggaacgccgcaaagaagcgt
ttctccacgcgggatctggaggagcagacgcggggagtggagtgccgtaaggactccgga
gtgattgatgagatcccgggcgcgtacaagccgatcgagaaggtcatcgatcagcagcgg
gacctggtggaggtcgtcgcccatctcaagcaggttgtctgcgtgaagggttga
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