Streptomyces halobius: K9S39_25050
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Entry
K9S39_25050 CDS
T09588
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
shau
Streptomyces halobius
Pathway
shau03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shau00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K9S39_25050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shau03021
]
K9S39_25050
03400 DNA repair and recombination proteins [BR:
shau03400
]
K9S39_25050
Enzymes [BR:
shau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K9S39_25050
Transcription machinery [BR:
shau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K9S39_25050
DNA repair and recombination proteins [BR:
shau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K9S39_25050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
TarH
Motif
Other DBs
NCBI-ProteinID:
UQA94684
UniProt:
A0ABY4MA86
LinkDB
All DBs
Position
5486062..5489985
Genome browser
AA seq
1307 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDEERRTRDLPSLEAHVSVERQQIEQRRDSDLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKSLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLETFDLEEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTRNSPKGMVLDCIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEAEREVKGE
GRSFGSVAEAIMAFDARELSLQAKVDIRFPIGTVPPRGWTPPVPEEGAALDSGFAVGEWQ
QGDSFRLRTTLGRALFNELLPEDYPFVDYSVGKKQLSQIVNDLAERYPKVIVAATLDNLK
AAGFYWATRSGVTVAVSDIVVPDAKKDIVTGYEAQDEKVQKQYERGLITKDERTQELINI
WTKATNEVAEAMNDNFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIK
ASFREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGL
KLRIAAKGADGVLRKADDVESSVYARMLAEDVVVDGKVIASANVDLGDVLIDQLVAHGVE
EVKTRSVLTCESAVGTCAYCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTG
GVAGDDITLGLPRVVELFEARTPKGVAPISEAAGRVRIEETEKTKKVIVTPDDGSDETSY
GVSKRARLLVSEGDHVEVGQALTVGAINPHDVLRILGQRAVQVHLVGEVQKVYNSQGVAI
HDKHIEIIIRQMLRRVTIIESGDAELLPGELVERTKFEGENRRVVAEGGHPASGRPQLMG
ITKASLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRN
IRVEPTEEAKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggcctcgccaccgctgacgacatc
cgtcagtggtcccacggtgaggtcaagaagccggagaccatcaactaccgcaccctcaag
cccgagaaggacggactcttctgcgagaagatcttcggcccgacccgggactgggagtgc
tactgcggtaagtacaagcgagtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcactcgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgctccc
gtgacccacatctggtacttcaagggcgtaccgagccggctgggctacctgctggacctc
gcgcccaaggaccttgagaaggtcatctacttcgccgcctacatgatcacgtgggtggac
gaggagcgccgtacgcgcgatctgccctcgctggaggcgcatgtctccgtcgagcgccag
cagatcgagcagcgccgcgactccgacctggaggcccgcgccaagaagctcgaaaccgac
ctggccgagctggaggccgagggcgccaaggccgatgtgcgccgcaaggtgcgcgagggc
gccgagcgcgagatgaagcagctgcgtgaccgtgcgcagcgcgagatcgaccgtctcgac
gaggtctggaaccgcttcaagagcctcaaggtccaggacctggagggggacgagctcctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggctccatgggtgccgctgcc
ctgcagaagcgcctggagaccttcgacctggaggaggaggccgagcgcctccgcgagatc
atccgtaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gccttcctgcagacccgcaacagccccaagggcatggtgctggactgcatcccggtgatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgatttg
aacgacctgtaccgccgggtcatcaaccgcaacaaccgtctgaagcgactgctcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcgcatgcttcaggaggctgttgacgcc
ctcttcgacaacggccgccgcggtcgcccggtcaccggtcccggtaaccgcccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccgtcagaacctgctcggtaag
cgagtcgactactcggcgcgttccgtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcggccgc
acggtcgtctacgacgtgctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcgcccaccctgcaccgcctcggtatccaggcgttcgagccgcagctggtcgagggcaag
gccattcagattcacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtccacctcccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgtccggtcaccatgccgacccaggac
atggtgctcggcctcttcttcctcaccacggacgaggcggagcgcgaggtcaagggcgag
ggccggtcgttcggctctgtcgccgaggccatcatggctttcgacgcccgtgaactgtcg
ctccaggccaaggtcgacatccgcttcccgatcggcaccgtcccgccccgtggctggacc
ccgccggttccggaggagggcgctgcgttggacagcggcttcgccgtgggcgagtggcag
cagggtgacagcttccggctgcggacgaccctgggccgcgcgctcttcaacgagctgctg
cccgaggactacccgttcgtcgactactcggtcggcaagaagcagctctcccagatcgtc
aacgacctggccgagcgctacccgaaggtcatcgtggcggcgacgctcgacaacctgaag
gcggccggcttctactgggcgacccgttccggtgtcaccgtcgccgtgtcggacatcgtc
gttccggacgcgaagaaggacatcgtcacgggctacgaggcccaggacgagaaggtccag
aagcagtacgagcgcggtctgatcaccaaggacgagcgcactcaggaactgatcaacatc
tggaccaaggcgaccaacgaggtcgccgaggcgatgaacgacaacttccccaagaccaac
cccatcttcatgatggttgactcgggtgcccgaggaaacatgatgcagatgcggcagatc
gccggtatgcgtggtctggtgtcgaacgccaagaacgagacgatcccgcggccgatcaag
gcgtcgttccgcgagggtctctccgtccttgagtacttcatctccacgcacggtgcgcgt
aagggtctggcggacaccgccctgcgtaccgccgactcgggttacctgacccgtcgtctg
gtggacgtctcgcaggacgtcatcatccgcgaggaggactgcggcaccgagcgcggcctc
aagctgcggatcgccgccaagggcgccgacggcgtcctgcgcaaggcggacgacgtcgag
tcctccgtgtacgcgcggatgctcgccgaggatgtcgtcgtcgacggcaaggtcatcgcc
tccgcgaacgtcgacctcggtgacgtgctcatcgaccagctggtcgcgcacggcgtcgag
gaggtcaagacccgctcggtcctgacctgtgagtccgcggtcggcacctgtgcctactgc
tacggccgttcgctggccaccggcaagctggtcgacatcggcgaggcggtcggcatcatc
gccgcccagtccatcggtgagcccggcacccagctgacgatgcgtaccttccacaccggt
ggtgtggccggtgacgacatcaccctgggtctgccgcgtgtggtcgagctcttcgaggcc
cgtacgcccaagggtgtcgccccgatctcggaggcggccggccgcgtccggatcgaggag
accgagaagaccaagaaggtcatcgtcaccccggacgacggcagcgacgagacgtcctac
ggcgtctccaagcgtgcccgtctcctggtgagcgagggcgatcacgtcgaggtcggccag
gcgctgaccgtgggcgcgatcaacccgcacgacgtgctgcggatcctcggccagcgtgcc
gtccaggtccacctggtcggcgaggtccagaaggtctacaacagccagggcgtggcgatc
cacgacaagcacatcgagatcatcatccggcagatgctgcgccgggtgacgatcatcgag
tccggcgacgcggagctgctgccgggcgagctggtggagcgcacgaagttcgagggcgag
aaccgtcgggtcgtggcggaaggcggccacccggcctccggccgtccgcagctgatgggt
atcaccaaggcctcgctggccaccgagtcctggctgtcggcggcgtccttccaggagacg
accagggtcctgaccgacgcggcgatcaacgccaagtcggactccctgatcggcctcaag
gagaacgtcatcatcggcaagctcatcccggccggtacgggcctgtcccgctaccgcaac
atccgggtcgagcccaccgaggaggccaaggccgcgatgtactcggccgtcggttacgac
gacatcgactactcgcccttcggcaccggctccggccaggcggtcccgctggaggactac
gactacgggccgtacaaccagtaa
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