Streptomyces hawaiiensis: CEB94_19595
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Entry
CEB94_19595 CDS
T06917
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
shaw
Streptomyces hawaiiensis
Brite
KEGG Orthology (KO) [BR:
shaw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shaw03019
]
CEB94_19595
Enzymes [BR:
shaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CEB94_19595
Messenger RNA biogenesis [BR:
shaw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CEB94_19595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
AAA_25
AAA_16
T2SSE
NACHT
AAA_30
PhoH
SLFN-g3_helicase
TsaE
Motif
Other DBs
NCBI-ProteinID:
QCD56811
UniProt:
A0A6G5RG74
LinkDB
All DBs
Position
4206321..4210265
Genome browser
AA seq
1314 aa
AA seq
DB search
MSTHPAPALGALAPRLTELSLRDAHRLGRRLEGARKIRKPEVRAAVLAEIEAEVGRAEER
MAGRRALVPEVTYPEQLPVSQKKDAIADAIRDHQVVIVAGETGSGKTTQIPKICLELGRG
VRGMIGHTQPRRIAARTVAERVAEELDTPLGAAVGWKVRFTDQVDPDATFVKLMTDGILL
AEVQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR
HFGDAPIVEVSGRTYPVEVRYRPLLEEDGDDADRDQITAITDAVEELQGEGKGDILVFLS
GEREIRDTADALTKKNYRFTEVLPLYARLSHAEQHRVFQPHTGRRIVLATNVAETSLTVP
GIKYVIDPGFARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEDDFD
ARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELNALDPA
QKDPRKRLTDTGRKLAQLPVDPRLARMVLEADRNGCAREVMVIAAALSIQDPRERPADKQ
AQADQQHARFKDETSDFLAYLNLWRYIREQQKERGSSSFRRMCKQEYLNFLRIREWQDIY
TQLRTVAKQMGIHLNEDDAPADRIHLSLLAGLLSHIGMKDVKEGAKNEYLGARSAKFAVF
PGSALFKKPPRFVMSAELVETSRLWARVNARIEPEWVEPLAAHLVKRTYSEPHWEKDQAA
VMAYEKVTLYGVPIVAQRKVNYGRIDPEVSRELFIRNALVEGDWRTHHKFFSDNRRLLTE
VEELEHRARRRDILVDDETLYDFYEQRIPEHVVSGAHFDSWWKHKRHEQPDFLDFEREML
INEKAGEVSKADYPDSWRQGNLKFRVTYQFEPGADADGVTVHVPLQVLNQVRDEGFDWQI
PGLREELVTELIRSLPKPIRRHYVPAPNFAKAFLDRSVPLQEPLTATMTRELRLMVGVPF
EADDFDLSKVPDHLKVTFRIVDERRRKLAEDKDLEALKLALRPKARQALSQAAAATAERS
GGESLERTGLTDWTIGSLTRVFETRRAGQPVKAYPALVDDGDTVSVRLFDTEAEQAQAMW
KGTRRLILRNIPVNPAKFASDRLTNAQKLALSANPHGSVQGLFDDCAMAAADKLIGDFGG
PAWDEESYRKLYDKVRAEIVDTTVRTVGQVQQVLAAWQACERRLKGVRSTVLLPNLQDVR
GQLDALVKPGFVTEAGLRRMPDLMRYLVAADRRLQQMATNVQRDTTRMQKVHEMQDEYAW
LLEQLPQGRPVPSSVLDIRWMIEELRVSYFAHALGTAYPVSDKRIVKAIDAAAP
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcaccccgcccccgccctcggcgccctcgccccccgcctgaccgagctgtcc
ctgcgcgatgcgcaccggcttgggcgcaggctcgaaggtgcgcgcaagatccgtaagccg
gaggtccgggccgccgtgctcgccgagatcgaggcggaggtcggcagggccgaggaacgg
atggccgggcggcgtgccctcgtgcccgaggtcacgtaccccgagcagttgccggtcagc
cagaagaaggacgcgatcgccgacgccatccgcgatcaccaggtcgtgatcgtcgccggt
gagacgggctccggcaagacgacgcagattcccaagatctgcctggagctcgggcgcggc
gtacgcggcatgatcgggcacacgcagccgcgcaggatcgccgcccgtacggtcgccgag
cgtgtcgccgaggagctggacaccccgctcggcgcggccgtcggctggaaggtccgcttc
accgatcaggtcgatccggacgccaccttcgtcaagctgatgacggacggcattctgctc
gccgaggtccagaccgaccgcgagctgcgtgcttacgacacgatcatcatcgatgaggcc
cacgagcggtcgctcaacatcgatttcctgctggggtatctcgcccagctgctgccgaag
cggccggacctgaaggtcgtcatcacgtcggccacgatcgaccccgagcgtttctcgcgg
catttcggtgacgccccgatcgtcgaggtcagcggccgtacgtatccggtggaggtccgt
taccggccgctgctggaggaggacggcgacgacgccgaccgcgaccagatcaccgcgatc
accgatgccgtggaggagttgcagggggagggcaagggggacatcctcgtcttcctctcc
ggtgagcgggagatcagggacacggcggacgcgctcaccaagaagaactaccgcttcacg
gaggtcctgccgctctacgcccggctctcccatgcggagcagcaccgtgtcttccagccg
cacaccggtcgccggatcgttctggccacgaatgtcgccgagacctcgctgacggtcccg
ggtatcaagtacgtcatcgatcccggcttcgcccggatctctcgctacagccaccgcacc
aaggtccagcggctgcccatcgagccggtgtcgcaggccagcgccaaccagcgcaagggc
cgctgcgggcgtacgtcggacggtatctgcatccggctgtacagcgaggacgacttcgac
gcccgcccggagttcacggacgcggagatcctccgtacgaacctcgcctccgtcatcctg
cagatgaccgcggcgggcctcggcgacatcgagaagttccccttcatcgacccgccggac
caccgcaacatccgcgacggtgtgcagctgctccaggagctgaacgctctggatccggcg
cagaaggacccccgtaagcggctcacggacaccggccgcaagctggcccagctgcccgtc
gacccccggctcgcccggatggtgctggaggcggacaggaacggctgtgcgcgcgaggtc
atggtcatagccgccgcgctgtccattcaggatccgcgtgagcgcccggccgacaagcag
gctcaggcggaccagcagcacgctcgtttcaaggacgagaccagcgatttcctggcgtac
ctgaacctctggcgttacatccgcgagcagcagaaggagcggggttcttcgtccttccgc
cggatgtgcaagcaggagtacctgaacttccttcgcatccgtgaatggcaggacatctac
acgcagttgcgcacggtcgccaagcagatgggcatccacctcaacgaggacgacgccccg
gccgaccgtatccatctctcgctcctggccggtctgctgtcgcacatcggtatgaaggac
gtgaaggaaggcgcgaagaacgagtatctgggggcgcggagcgccaagttcgcggtcttt
cccggctcggcccttttcaagaagcccccgcgtttcgtgatgtccgccgagctcgtcgag
acgtcccgcctgtgggcccgtgtcaacgccaggatcgagcccgagtgggtcgagcccctc
gccgcgcacctcgtcaagcgcacgtacagcgagccgcactgggagaaggaccaggcggcg
gtgatggcgtacgagaaggtcacgctctacggcgtgccgatcgtggcgcagcggaaggtg
aactacgggcggatcgatccggaggtcagccgtgagttgttcatccggaacgcgctggtc
gagggtgactggcgtacgcaccacaagttcttctcggacaatcgccgccttctcaccgag
gtcgaggagctggagcatcgggcccggcgccgggacatcctggtcgacgacgagacgctg
tacgacttctacgaacagcggattcccgaacacgtcgtttccggggcgcacttcgactcc
tggtggaagcacaagcggcacgagcagcccgacttcctcgatttcgagcgcgagatgctc
atcaacgagaaggcgggtgaggtcagcaaggccgactatccggactcctggcgtcagggg
aacttgaagttccgggtgacgtaccagttcgagccgggcgcggatgccgacggtgtgacc
gtccacgtcccgctgcaggtcctcaaccaggtcagggacgagggtttcgactggcagatc
ccgggtctgcgcgaggagctggtgacggagctgatccggtcgctgcccaagccgatccgc
cggcattacgtccccgcgccgaacttcgcgaaggcgtttttggaccggtccgtccctctc
caggagcccctcaccgcgacgatgacccgcgagttgcggctcatggtgggcgtgcccttc
gaggcggacgacttcgatctgtccaaagtccccgaccatctgaaggtcacgttccggatc
gtcgacgagcggcgccgcaaactggccgaggacaaggacctggaggcgctgaagctcgcg
ctgcgtccgaaggcccgccaggctctctcccaggcggccgcggcgaccgccgagcgctcc
ggtggtgagtccctggagcgcacgggcctgaccgactggacgatcggcagcctcacccgg
gtcttcgagacccgtcgggccggccagccggtcaaggcttacccggcgctggtcgatgac
ggcgacacggtctccgtgcgcctcttcgacacggaggcggagcaggcgcaggccatgtgg
aagggcacgcgtcggctgattctgcgcaacatcccggtcaacccggcgaaattcgcgagc
gatcgcctgacgaacgcgcagaagctggcgctgtcggcgaatccgcacggctcggtccag
ggtctgttcgacgactgcgcgatggccgccgcggacaagctgatcggggacttcggcggg
ccggcgtgggacgaggagtcgtaccgcaagctgtacgacaaggtgcgtgccgagatcgtc
gacacgaccgtccgtacggtggggcaggtgcagcaggtcctggccgcctggcaggcctgt
gaacgacgtctgaagggggtacgaagcaccgtgctgctgccgaacctccaggacgtacgg
gggcagctggacgccctcgtgaagccgggtttcgtgacggaggcggggctgcggcgcatg
ccggacctgatgcgttacctggtggcggccgaccgtcgtctgcagcagatggcgacgaac
gtccagcgggacaccacgcggatgcagaaggtccacgagatgcaggacgagtacgcctgg
ctcctggagcagttgccgcagggccgtccggtgccgtcgtcggttctggacatccgctgg
atgatcgaggagctccgggtcagctatttcgcccacgcgctcggtacggcgtaccccgtc
tccgacaagcggatcgtgaaggcgatcgacgcggcggcaccgtaa
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