Streptomyces hawaiiensis: CEB94_24615
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Entry
CEB94_24615 CDS
T06917
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
shaw
Streptomyces hawaiiensis
Pathway
shaw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shaw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CEB94_24615 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shaw03021
]
CEB94_24615 (rpoC)
03400 DNA repair and recombination proteins [BR:
shaw03400
]
CEB94_24615 (rpoC)
Enzymes [BR:
shaw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CEB94_24615 (rpoC)
Transcription machinery [BR:
shaw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CEB94_24615 (rpoC)
DNA repair and recombination proteins [BR:
shaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CEB94_24615 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
QCD57672
UniProt:
A0A6G5RJB8
LinkDB
All DBs
Position
5236761..5240660
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITYVDEERRTRDLPSLEAHVSVERQQIEQRRDADLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWTRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDGEMRDLKGE
GRSFASVAEAIMAFDAGELSLQSRIDVRFPVGTIPPRGWTPPAREEGEPEWQQGDTFRLN
TTLGRALFNELLPEDYPFVDYEVGKKQLSEIVNDLAERYPKVIVAATLDNLKASGFFWAT
RSGVTVAISDVVVPEAKKEIVKGYEAQDEKVQKQYERGLITKDERTQELIAIWTKATNEV
AEAMNDNFPKTNPIFMMVNSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLRLKIADRN
AEGGLVKTEDVETSVYARCLAEDIVVDGQVLAPAGTDLGDVLIEELVRRGVEEVKTRSVL
TCESAVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVAPISEAQGRVRIEETEKTKKLVVTPDDGSDETAFPISKRARL
LVSEGEHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVQEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctccggatcggtctggccaccgctgacgacatc
cgtcagtggagccacggcgaggtcaagaagcccgagacgatcaactaccgcacgctcaag
cccgaaaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgtgagcggtgtggcgtc
gaggtcacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctcgccgccccc
gtcacgcacatctggtacttcaagggtgttccgtcgcgtctgggctacctgctcgacctg
gcccccaaggacctcgagaaggtcatctacttcgcggcgtacatgatcacgtacgtcgac
gaggagcgccggacgcgcgacctgccctcgctggaggcccacgtctccgtcgagcgccag
cagatcgagcagcgccgcgatgccgacctggaggcccgcgccaagaagctcgagaccgac
ctggccgagctggaggccgagggcgccaaggccgacgtacgccgcaaggtgcgcgagggt
gccgagcgcgagatgaagcagctgcgcgaccgtgcgcagcgcgagatcgaccgtctcgac
gaggtgtggacccggttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggctcgatgggtgccgcggcg
ctgcagaagcgcctggagtccttcgacctcgacgaggaggccgagcgccttcgcgagatc
atccgcaccggcaagggccagaagaagacccgtgcgctcaagcgcctgaaggtcgtctcc
gcgttcctgcagaccagcaacagccccaagggcatggtgctggactgcgtgccggtcatc
ccgccggaccttcgcccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtgatcaaccggaacaaccgcctgaagcgccttctcgacctc
ggtgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgccgtggtcgcccggtcaccggtcccggtaaccgcccgctgaag
tccctcagcgacatgctgaagggcaagcagggccgcttccgtcagaacctgctcggtaag
cgtgtggactactccgcgcgttccgtgatcgtcgtcggtccgcagctgaagctgcaccag
tgcggtctgccgaaggcgatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgcggccgc
acggtcgtgtacgacgtgctggaagaggtcatcgcggagcacccggttctgctgaaccgt
gcgcccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgcccggtgacgatgccgacccaggac
atggtcctcggtctgttcttcctcaccacggacggcgagatgcgcgacctcaagggcgag
ggccgttccttcgcctcggtcgccgaggcgatcatggccttcgacgcgggggagctctcg
ctccagtcgaggatcgacgtccgcttcccggtcggcaccatcccgccgcgtggctggacc
ccgccggcgcgtgaggagggtgagcccgagtggcagcagggtgacaccttccggctgaac
accaccctgggccgtgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tacgaggtcggcaagaagcagctctccgagatcgtcaacgacctcgccgagcgctacccg
aaggtcatcgtggcggcgacgctcgacaacctgaaggcgtccggcttcttctgggcgacc
cgctccggtgtcaccgtggccatctccgacgtcgtcgttcccgaggcgaagaaggagatc
gtcaagggctacgaggcgcaggacgagaaggtccagaagcagtacgagcgtggtctgatc
accaaggacgagcgcacgcaggagctcatcgcgatctggaccaaggcgaccaacgaggtc
gccgaggcgatgaacgacaacttcccgaagaccaacccgatcttcatgatggtgaactcg
ggtgcacgaggcaacatgatgcagatgcgtcagatcgccggtatgcgtggtctggtgtcg
aacgcgaagaacgagacgatcccgcgtccgatcaaggcgtcgttccgtgagggcctgtcc
gtgctggagtacttcatctccacgcacggtgcccgtaagggtctggcggacaccgctctg
cgtaccgccgactcgggttacctcacgcgtcgtctggtcgacgtctcccaggacgtcatc
attcgcgaggaggactgcggcaccgagcgcggtctgcgtctgaagatcgccgaccggaac
gccgagggcgggctggtcaagaccgaggacgtcgagacgtccgtgtacgcgcgctgcctc
gccgaggacatcgtggtcgacgggcaggtgctggccccggccggtaccgacctgggcgac
gtcctcatcgaggagctcgtccggcgcggtgtcgaggaggtcaagacccgctcggtcctg
acctgcgagtccgccgtcggcacctgcgcgatgtgctacggccgttcgctcgccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggtacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
cagggtctgccgcgtgtcgtcgagctcttcgaggcccgtaccccgaagggtgtcgccccg
atctccgaggcccagggccgcgtgcggatcgaggagaccgagaagaccaagaagctcgtc
gtcaccccggacgacggcagcgacgagacggcgttcccgatctcgaagcgtgcccggctc
ctggtcagcgagggcgagcacgtcgaggtgggccagaagctcaccgtgggtgccaccaac
ccgcacgacgtgctgcgcatcctgggccagcgtgccgtccaggtccacctggtcggcgag
gtccagaaggtctacaactcgcagggtgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctccgccgtgtgacgatcatcgagtccggcgacgccgagctgctgccc
ggtgagctggtcgagcgctcgaagttcgagaccgagaaccgtcgtgtggtccaggagggc
ggtcacccggcctccggtcgtccgcagctgatgggtatcaccaaggcctcgctggcgacg
gaatcctggctgtcggccgcctccttccaggagacgacccgagtcctgacggatgcggcg
atcaacgccaagtccgacagcctcatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggtctgtcccgctaccgcaacatccgggtcgagccgaccgaggag
gccaaggccgcgatgtactcggccgtcggctacgacgacatcgactactcgccgttcggc
acgggctccggccaggccgttccgctggaggactacgactacggtccgtacaaccagtaa
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