Streptomyces hawaiiensis: CEB94_27855
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Entry
CEB94_27855 CDS
T06917
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
shaw
Streptomyces hawaiiensis
Pathway
shaw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
shaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CEB94_27855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shaw03400
]
CEB94_27855
Enzymes [BR:
shaw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CEB94_27855
DNA repair and recombination proteins [BR:
shaw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CEB94_27855
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QCD58233
UniProt:
A0A6G5RJI0
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Position
complement(5913858..5914739)
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AA seq
293 aa
AA seq
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MAPITEVEGRRLALSNLEKVLYPATGFTKGEVLHYYATVAEVLLPHLRDRAVSFLRYPDG
PDGQVFFTKNVPPGTPDWVTTAEVPRVEGPSRMVLVQDLPSLMWSANLVAEFHTHQWLVD
TPDEADRIVFDLDPGAPATIVQCCEVALWLRERLARDGIEAYAKTSGSKGLHLLAAVRGA
SSERVSEYAKALAVEAEKAMPRLALHRMTRSLRPGKVFVDWSQNAARKTTATPYTLRARP
EPTVSAPVTWEEVRECRAPGRLDFHAVDIAPRIQDYGDLLAPLLDTDGAGALP
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctatcacggaggtggaggggcgacggctcgctctcagcaatctggagaaggtg
ctgtatcccgccaccggcttcaccaagggcgaggtgctgcactactacgcgaccgtcgcc
gaggtcctgctgccccatctgcgtgatcgggcggtgtccttcctgcggtatccggacggg
ccggacgggcaggtgttcttcacgaagaacgtgccgccgggtacgcccgactgggtcacc
accgccgaggtgccacgggtcgaggggccctcgcggatggtcctggtgcaggatctgccg
agcctgatgtggtcggcgaacctcgtggccgagttccacacccaccagtggctcgtcgat
acgccggacgaggccgaccggatcgtcttcgacctcgatccgggggcgccggcgaccatc
gtgcagtgctgcgaggtcgcgctgtggctgcgggaacggctcgcccgggacggcatcgag
gcctacgccaagacttccggctcgaaggggctgcatctgctcgccgccgtgcggggggcg
tcctccgagcgggtctccgagtacgccaaggcgctcgccgtcgaggccgagaaggccatg
ccgcgactcgcgctgcaccggatgaccaggagcctgcgtccggggaaggtcttcgtcgac
tggagccagaacgccgcccgcaagacgacggcgaccccctacaccctccgggcccgcccg
gaaccgaccgtctcggccccggtgacgtgggaggaggtcagggagtgccgcgcacctggc
cggctggacttccacgcggtcgacatcgccccgaggatccaggactacggcgacctgctc
gctccgctgctggacacggacggggcgggggcgttgccgtag
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