Salmonella enterica subsp. enterica serovar Heidelberg B182: SU5_02252
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Entry
SU5_02252 CDS
T02011
Name
(GenBank) ATP-dependent helicase hrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
shb
Salmonella enterica subsp. enterica serovar Heidelberg B182
Brite
KEGG Orthology (KO) [BR:
shb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shb03019
]
SU5_02252
Enzymes [BR:
shb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SU5_02252
Messenger RNA biogenesis [BR:
shb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SU5_02252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
AAA_16
ResIII
PhoH
NTPase_1
SLFN-g3_helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AFH45610
LinkDB
All DBs
Position
complement(2468951..2472871)
Genome browser
AA seq
1306 aa
AA seq
DB search
MLPKSFMTEQSTLTLQVLQQRLDALMLRDKQRFARRLHGVKKVKNPDAQQAIFQTMAKEI
EQAAAQVALREAARPSITYPQNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKIC
MELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMT
DGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDP
ERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGRESPGDIL
IFMSGEREIRDTAEALNKLNLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETS
LTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSE
DDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGA
ITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERP
VDKQQASDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRLCRTDYLNYLRVREW
QDIYTQLRQVVKELGIPVNSEPAEYREIHVALLTGLLSHIGMKDADKQEYTGARNARFSI
FPGSGLFKKPPKWTMVAELVETSRLWGRIAARIEPEWVEPVAQHLIKRSYSEPHWERAQG
AVMATEKVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRA
EVEELEHKSRRRDILVDDDTLFEFYDQRISHDVISARHFDSWWKKISRETPDLLNFEKSM
LIKEGAEKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVDESGFEWQ
IPGLRRELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVT
VDREDWHWDQVPEHLKITFRVVNDKNKKLQEGRSLAELKNALKGKVQETLSAVADDGIEQ
SGLHIWSFGELPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWCGLRRLL
LLNIPSPIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCIACGVDKLIDANGGPVWNEAGF
TALHEKVRAELNDTVVDIAKQVERILTTVFNINKRLKGRVDMSMALGLSDIKAQMSGLVY
RGFVTGNGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVESVQQAWQQWINKLPPA
RREDDDVKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMDQITA
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atgctgcccaagagctttatgactgaacaatctacgttgacgcttcaggtgttacagcag
cggctggatgcactgatgctgcgcgacaaacagcgctttgcgcgccgcctgcatggcgta
aagaaagtaaaaaatcctgatgcgcaacaggccattttccagacgatggcgaaagaaatt
gaacaggctgcggcgcaagtcgccctccgcgaagcggcgcgcccctcaatcacttatccg
caaaatctgcctgttagccagaagaaacaggacattctggaagcggtccgcgatcatcag
gtagtgatcgtggcaggggaaaccggttccggtaaaaccacccagttgccgaaaatttgt
atggagctgggacgcggaattaaaggacttattggacatactcagccgcgtcgcctggcg
gcgcgcaccgttgctaaccgcattgccgaagagttgcaaacggagcctggcggctgcatc
ggctataaagttcgtttcagcgatcatgtcagtagcaacaccatggtcaaactgatgacg
gacggtatcctgctggcggaaatccagcaggacagactattgatgcagtatgacaccatc
attattgatgaagcgcatgaacgcagcctgaatattgacttcttgctcggctatctgaaa
gagcttctgccgcgtcgccccgatctgaaagtgattattacctctgcgaccatcgacccg
gaacgcttctcgcgccactttaataacgcgccgattatcgaagtctctggccgaacgtat
cccgtagaggttcgttatcgccccatcgtggaagaggctgacgacactgaacgcgatcag
ctacaggcaattttcgacgctgttgatgaactggggcgtgaaagtcccggcgatatcctg
atttttatgagcggagagcgggaaatccgcgataccgccgaagccctgaacaagctgaac
ttacggcataccgaagtgttgccgctgtatgcacgcttgtcgaacagcgaacagaaccgc
gttttccagtcgcacagcggacgccgtatcgtgctggcgactaacgtggcggaaacctcg
ctgacggtgccgggtatcaagtatgtgatcgatcctggcactgcgcgcatcagccgctac
agctaccgcactaaagtgcagcgcctgccgattgaaccgatctcacaggcttccgccaac
cagcgtaaagggcgttgcggacgcgtatcggaagggatttgcattcgtctgtattcggaa
gatgactttttgtcacgtccggaatttaccgacccggaaattctacgtaccaacctggcg
tcggttattttgcagatgaccgccctggggctgggtgacattgccgccttcccgtttgtc
gaagcgccggataagcgcaatattcaggatggcgtgcgtttgttggaagagctgggggcg
attaccgccgacgaacagcaaacggcatataagctgacgccactgggccgacaattatcc
cagttgccggtcgacccgcgcctggcgcgtatggttctggaagcgcaaaaacatggctgt
gtgcgcgaagcgatgatcattacttccgcactctctattcaggatccgcgcgagcgccca
gtggataagcagcaggcttccgatgagaaacaccggcgcttccatgataaggagtccgat
tttctggcgtttgttaacctgtggaattacctcggcgagcaacaaaaggccctgtcgtcg
aatcaattccgccgtctgtgtcgcaccgactatctgaactatttacgcgtgcgtgagtgg
caggatatctatacccaactgcgtcaggtggtaaaagaactggggattccggtaaacagc
gaacccgcagagtaccgggaaattcacgttgcgttgttaacgggactgttgtcgcatatc
gggatgaaagatgccgataaacaagagtacaccggcgcgcgtaacgcccgattctctatt
ttccccggttccggtttattcaaaaaaccgccgaaatggacaatggtcgcagaactggtg
gagaccagccgtttgtgggggcgcatcgctgcccgcattgagccagaatgggtggaaccg
gtagcccagcacctgattaaacgttcatatagcgaaccgcactgggagcgggcgcaaggc
gcggtgatggcgacggaaaaggttactgtctacggtctgccgattgtcgccgcgcgcaaa
gtgaattacagccagattgacccggcgttgtgtcgcgagttgttcatccgccatgcgctg
gtggagggggactggcaaacccgtcatgccttcttccgtgagaatctaaaattgcgtgcg
gaagtcgaggaacttgagcacaaatctcgccgccgcgatatcctggtggatgacgatacc
ctgtttgagttttatgaccagcgtattagccatgacgttatttccgcccgccactttgat
agttggtggaaaaaaatcagccgcgagacgccggatctgctcaactttgaaaaaagtatg
ctgattaaagaaggcgcggaaaaaatcagcaaactggattacccgaatttctggcaccag
ggcaatctcaagctgcgtttgagctatcagtttgaaccgggcgcggatgctgacggcgtg
accgtccatattccgttgccgctacttaaccaggttgacgagagcggttttgaatggcag
atcccggggctgcgccgtgaattagttattgcgctgattaaatcgttgccaaaaccggta
cgtcgcaactttgttccggcgccaaactatgctgaagcgtttttaggtcgcgtaacgccg
ctggagctgccgctgctggacgctctggagcgtgaactgcgccggatgaccggcgtcacg
gtcgatcgggaagactggcattgggatcaggtgcccgagcatctgaaaatcacgtttcgc
gtggtgaatgacaaaaacaagaaactgcaggaagggcgttcgctcgccgagcttaaaaat
gcgctgaaaggcaaagtgcaggagacgctctcggcggtggcggatgacggcatcgagcag
agcgggctgcatatctggagtttcggcgagctgccggaaagctacgaacagaaacgcggt
aattataaagtgaaggcgtggccggcgttagtggatgagcgtgacagcgtcgctatcaaa
ttgtttgataatccgctggaacaacaacaggcgatgtggtgcggtttacgccgtctgctg
ttgctcaatattccttcaccgattaagtatctgcatgagaaattgccgaataaagccaag
ctggggctgtactttaacccgtacggcaaagtactggagttgattgatgactgtatcgcc
tgcggggtagataagctgatagatgccaacggcggaccggtgtggaacgaagcaggtttc
accgcgctgcacgaaaaggtacgcgccgagctgaatgatactgtggtggatatcgcgaag
caggttgagcggatcctgacgaccgtattcaatatcaataagcgtctgaaagggcgggtg
gatatgagcatggcgttggggctttccgatatcaaggcgcagatgagcggtctggtatac
cgtggttttgtgactggcaacggctttaaacgtctcggcgatacgctgcgttatctgcag
gcaattgaaaagcggctggagaaactggctgtcgatccgcaccgcgatcgggcgcaaatg
ctgaaagtcgaaagcgtccagcaggcgtggcaacaatggataaataaactgcctccagcg
cgtcgcgaagatgatgatgttaaagagatccgttggatgattgaagaactgcgtgtcagt
tatttcgcccaacagctcggtacgccttatcctatttccgataagcgtattttacaggcc
atggatcagattacggcctaa
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