Salmonella enterica subsp. enterica serovar Heidelberg B182: SU5_02420
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Entry
SU5_02420 CDS
T02011
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
shb
Salmonella enterica subsp. enterica serovar Heidelberg B182
Brite
KEGG Orthology (KO) [BR:
shb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
shb03016
]
SU5_02420
Enzymes [BR:
shb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SU5_02420
Transfer RNA biogenesis [BR:
shb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SU5_02420
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AFH45773
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All DBs
Position
complement(2651530..2652645)
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AA seq
371 aa
AA seq
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MIETDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPLGISDWS
PLKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLSWGFASMVEE
YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR
LMQQRRQEIQAPEEAWRDITNAWQLRTRQLACLQLLADWRLRKARERDMAVNFVVREENL
WAVARYMPGSLGELDSLGLSGSEIRFHGKTLISLVAKAQALPEEALPEPLLNLMDMPGYR
KAFKAIKALVAEVSASHHVSGELLASRRQINQLLNWHWKLKPQNGQPELISGWRAELMEE
KLTLLLQEYPL
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgattgaaacggacgatgcgctggcgagcctgtgtgaggctgtccgcgcatgtccggct
attgctttagatacggaatttgtccgtacccgcacctattacccgcagttaggattgatc
cagttatttgacggggcaaatgtcgccctgatcgatccgctcggcatcagcgactggtcg
ccgttaaaagcggtgttgcgcgatacgggaatcaccaaatttctgcacgcgggtagcgaa
gatctggaagtatttctgaatgcgtttggcgaactgccggaacccctgattgatacgcaa
attctggcggcgttttgcgggcgtccgctgtcgtggggttttgcgtcgatggtagaagag
tatacgggcgtggcgctggacaaaagcgagtctcgtaccgactggttagcccggccttta
agcgaacgtcagtgtgaatacgcggcggcggatgtctggtatctgttaccgatcgccaaa
aagctgatgattgaaactgaagccgcaggatggctgcctgccgcgcttgatgagtgtcgg
ttgatgcagcagcgccgtcaggagattcaggcgccggaagaagcatggcgggatatcacc
aatgcctggcaactgcgtactcgccagttagcctgtctgcaacttttagctgactggcgg
ctacgtaaggcgcgtgagcgcgatatggcggtgaactttgttgtgcgtgaagaaaatctg
tgggcggtcgcgcgttatatgccgggcagtctcggtgagctggatagcctggggctttcc
ggcagcgagattcgttttcatggcaagacgttgatatcgctggtggcgaaagcacaggcg
ctaccggaagaggcattgccggaacccctgttgaatctgatggacatgccgggctatcgc
aaagcgtttaaagccatcaaagcgctggtggcggaggtgagcgcgtcgcatcacgtcagc
ggcgagctactggcatcgcgtcggcagattaatcagttgcttaactggcactggaaatta
aaaccgcaaaatgggcaaccggaattgatttccggctggcgcgccgaactgatggaggag
aagttaactcttctgttgcaggagtatccgctttaa
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