Salmonella enterica subsp. enterica serovar Heidelberg B182: SU5_03766
Help
Entry
SU5_03766 CDS
T02011
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
shb
Salmonella enterica subsp. enterica serovar Heidelberg B182
Pathway
shb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SU5_03766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shb03019
]
SU5_03766
03009 Ribosome biogenesis [BR:
shb03009
]
SU5_03766
Enzymes [BR:
shb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SU5_03766
Messenger RNA biogenesis [BR:
shb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SU5_03766
Ribosome biogenesis [BR:
shb03009
]
Prokaryotic type
rRNA helicases
SU5_03766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AFH47089
LinkDB
All DBs
Position
complement(4119656..4121545)
Genome browser
AA seq
629 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELD
LETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPRRER
RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE
VLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREGGRGD
GRRFSGERRESRGPRRDDSTGRRRFGGDA
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctggggctgaaggctcctatccttgaagcc
cttaccgatctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctg
ctgggcggtcgcgacgtgctgggcatggcccagaccggtagcggcaaaaccgcagcgttc
tctttaccgctgctcaacaatcttgatcctgagctgaaggcacctcagattctggtgctg
gcgccaacccgcgaactggcggtacaggttgccgaagccatgacggatttctctaaacac
atgcgcggcgtaaacgtggttgccctgtacggcggtcagcgttatgacgtgcagttacgc
gccctgcgtcaggggccgcagatcgttgtcggtacgccgggacgtctgcttgatcactta
aaacgtggcactctcgacctctctaaactgagtggtctggtgctggatgaagccgacgaa
atgctgcgtatgggcttcatcgaagacgttgaaactattatggcgcagatcccggaaggt
catcagaccgctctgttctccgccaccatgccggaagcgattcgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcattcagtccagcgtgactacccgtcctgacatc
agccagagctactggactgtctggggcatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagcggaagactttgatgcggcgattatcttcgtgcgtaccaaaaacgcgaccctggaa
gtagcagaagcgctggaacgtagcggctacaacagcgccgcgttgaatggcgatatgaac
caggcgctgcgtgagcagactctggaacgcctgaaagatggtcgtctggacatcctgatc
gctaccgacgttgcggcacgtggtctggacgttgaacgtatcagcctggtggtgaactac
gatatcccgatggattccgagtcctacgttcaccgtatcggtcgtaccggccgtgcgggt
cgcgccggtcgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatc
gaacgcaccatgaagctgaccattccggaagtggaactgccgaacgcagaactgctgggt
aaacgccgtctggaaaaattcgccgcgaaagttcagcagcaactggaaagcagcgatctg
gatcagtaccgtgcgctgctggcgaaaatccagccgtctgctgaaggtgaagagctggat
ctcgaaacgctggccgccgcactgctgaaaatggcgcagggcgagcgtccgctgattctg
ccgccggatgcgccgatgcgtcctaagcgtgaattccgtgaccgtgacgaccgtggtccg
cgcgatcgtaatgaccgtggcccgcgtggcgatcgtgaagaacgtccgcgtcgtgaacgt
cgtgacgttggcgatatgcagttataccgcattgaagtgggccgtgatgacggcgttgaa
gttcgtcatatcgtgggcgctatcgctaacgaaggcgacattagcagccgttacattggt
aacattaagctgttcgcgtctcactccaccatcgagctgccgaaaggtatgccgggcgaa
gtgctccagcacttcacgcgtactcgcattctgaacaagccgatgaatatgcagctgttg
ggtgatgcggttccgcacgcgggcggcgaacgtcgcggcggtggtcgtagcttcagtggc
gaacgtcgtgaaggcggtcgtaatttcagcggcgaacgtcgtgaaggtggtcgtggtgat
ggtcgtcgcttcagcggcgaacgtcgtgaaagccgtggtccgcgtcgtgatgactctacc
ggtcgccgtcgtttcggcggtgatgcgtaa
DBGET
integrated database retrieval system
