Salmonella enterica subsp. enterica serovar Heidelberg B182: SU5_03994
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Entry
SU5_03994 CDS
T02011
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
shb
Salmonella enterica subsp. enterica serovar Heidelberg B182
Brite
KEGG Orthology (KO) [BR:
shb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
shb03016
]
SU5_03994
Enzymes [BR:
shb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SU5_03994
Transfer RNA biogenesis [BR:
shb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SU5_03994
Prokaryotic type
tRNA splicing ligases
SU5_03994
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AFH47316
LinkDB
All DBs
Position
complement(4352946..4354163)
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AA seq
405 aa
AA seq
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MMNYELMTTQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGS
VIPTKGAIIPAAVGVDIGCGMNALRTSLTAADLPENLAELRSAIEAAVPHGRTTGRGRRD
VGAWGNPPANVDEKWAQLEAGYQWLTQKYPRFLNTNSYKHLGTLGTGNHFIEICLDETDR
VWIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWA
QQFASLNREAMMENALAALQRCVEKPIALDMDEINCHHNYVQKEQHFGEEIYVTRKGAVS
ARRGEFGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAH
VECRKDADVIDEIPMAYKDIDAVMAAQSDLVEIMYALRQVVCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgatgaattacgaattaatgaccacccagaacgcaccggtaaaaatgtggaccaaaggc
gtaccggtagaagacgatgcccgtcagcaactgattaatacggcgaaaatgccgtttatt
ttcaaacatattgccgttatgccggatgtgcatttggggaaaggatcgaccatcggtagc
gtgatcccgacgaaaggggcgattattccggcggcggtgggcgtggatatcggttgtgga
atgaacgcgctgcgtaccagcttaacggcggccgatctgccggaaaatctggcggagctg
cgtagcgccatagaggccgctgtgcctcacgggcgtaccaccggacgcgggcgtcgcgat
gtgggcgcatggggaaacccgcccgccaacgttgatgaaaaatgggcgcagctggaagcg
ggatatcagtggttaacgcaaaaatatccgcgctttttgaataccaatagctataagcac
ctgggaacattgggaaccggtaaccactttattgagatctgtctggatgaaaccgatcgg
gtatggatcatgctgcactccggttcgcgcgggatcggtaacgccatcggcacctatttt
atcggcctggcgcagcaagaaatgcaggagcagttagaaacgctgccgtcccgcgatctg
gcgtattttaatgaaggaagcgaatattttgacgattacctgaaagcggtacactgggcg
cagcaattcgccagcctgaaccgcgaggcgatgatggaaaacgcgctggcggcgctccag
cgctgcgtggaaaaaccgatcgccctcgatatggacgagataaactgccaccataactat
gtgcaaaaagagcagcactttggcgaagagatctatgtgacgcgtaaaggggcggtttcg
gcgcggcgcggtgagttcggtatcattcctggttcgatgggggcgaaaagctttatcgtg
cgcgggctgggtaacgaagagtcgttctgttcgtgcagccacggcgccgggcgtgtgatg
agccgaacgaaagcgaagaaactgtttagcgttgacgatcagattcgcgccaccgcgcat
gtcgaatgccgtaaagatgcggacgtgatcgacgagatcccaatggcgtataaagatatt
gatgcggtgatggcggcgcagtctgacctggtggaaatcatgtacgccctgcggcaggtg
gtgtgcgttaaaggatag
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