Salmonella enterica subsp. enterica serovar Heidelberg B182: SU5_0837
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Entry
SU5_0837 CDS
T02011
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
shb
Salmonella enterica subsp. enterica serovar Heidelberg B182
Brite
KEGG Orthology (KO) [BR:
shb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
shb03016
]
SU5_0837
Enzymes [BR:
shb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
SU5_0837
Transfer RNA biogenesis [BR:
shb03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
SU5_0837
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AFH44207
LinkDB
All DBs
Position
complement(960105..960635)
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AA seq
176 aa
AA seq
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MSEPKRLFFAIDLPDDARAQIIAWRAAHFASEDGRPVAAANLHLTLAFLGDVSSDKQRAL
AQLAGRIRQPGFTLHLDDAGQWLRSRVVWLGMRQPPRGLLQLANMLRAQAARSGCYQSPQ
PFHPHITLLRDASHTVAIPPPGFCWSFPVTSFALYASSYGQGRTRYAELQRWTLGE
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagccaaaacggctgttttttgcgattgacttacccgacgacgcgcgcgcgcaa
attatcgcctggcgcgccgcccattttgcgtctgaagacggacgccccgtggcagcggcg
aacctgcacctgacgctggcctttttaggcgacgtcagtagcgataagcagcgcgcgctt
gcgcaactggccggacgaattcgccagccgggctttacgctacatctggatgacgccggt
cagtggctgcgttcgcgcgtggtgtggctggggatgcgccagccgccgcgcgggttgttg
cagttggctaatatgctgcgcgcgcaggccgcccgcagcggttgttaccaaagcccgcag
ccttttcacccgcatattacgctgctgcgcgacgccagccatacggtggctatcccgccg
ccgggcttttgctggtcatttccggtcacgtcgtttgcgctttacgcctcttcgtatggg
caaggccgtacccgctatgccgagctgcagcgctggacgctgggcgaataa
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integrated database retrieval system
