Entry |
|
Name |
(GenBank) THUMP domain protein
|
KO |
|
Organism |
shc Staphylothermus hellenicus
|
Brite |
KEGG Orthology (KO) [BR:shc00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:shc03016]
Shell_0023
Enzymes [BR:shc01000]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Shell_0023
Transfer RNA biogenesis [BR:shc03016]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Shell_0023
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
complement(19886..21199)
|
AA seq |
437 aa
MEESSTENQSAKIIKTAKALLARYPLCHHCLGRQFAKYGLQLKNSERGYAIKTILQMILH
KELQDKIIDKETLRKYAVNAGDPITRLYEKIYEEKVEPAKCYICGNKLGEEYFEDLARKV
AELLEQYNAYTFIVGVSLSQETMLREIEVSSFSGLETSESIKNEIKREVGKIVRDKYGYI
PDFDRPDVMVIIDYETDMVRAVVNPILFEGRYWKRGRNISHTIWLSKTGIKEYPYSLEEF
FNDRLREIFESERIVLHASGREDVDARMLGTGRPMVIEVKNPRFRYVDMDLINELLRSTL
IEAEITGYSSRAKIEYLKGEGSKKRKAYKILVYTAEPITSDKLRMLEEEYRNRVIHQRTP
KRILRRKKDTLRIRRVYEVKTKLLHNKLFEAIVYCDGGLYVKELVHGDDGRTTPSFSDVL
GVQAYPLELDVFVVETK |
NT seq |
1314 nt +upstreamnt +downstreamnt
atggaagaatcgagtaccgagaaccaatcagccaagataattaagacagctaaggctttg
ttagcaaggtatcctttatgtcatcattgcttaggaagacaatttgctaaatatggtttg
caactgaagaattctgagagaggatacgctattaagacgattctacaaatgatccttcat
aaagagctccaggataaaatcattgataaagaaactcttagaaaatacgctgtaaacgct
ggagaccctattacaagattgtatgagaaaatatatgaggaaaaagtagagcctgcgaaa
tgttatatatgtggaaacaagctgggcgaggaatactttgaagatcttgctagaaaagtg
gctgagctgttggaacagtataatgcatatacatttatagtaggcgtgtcattgtctcag
gaaacaatgcttagagaaatagaagtatcgagtttctccgggttagaaaccagtgaatcc
attaagaacgagattaagagggaggttggaaaaatagttagagataaatatggttatata
ccggattttgatcgaccagatgttatggtgataatagattatgaaacagatatggtaaga
gcagtcgttaatccaatattgtttgagggaagatactggaagcgtggaagaaatatttca
catacaatatggttatctaaaacagggatcaaggagtatccttatagtctagaagaattc
ttcaatgataggctaagagaaatatttgaatctgaaagaatagttctccacgcttcaggc
agagaagatgttgatgctagaatgcttggaacaggtagacccatggttatcgaggtgaag
aatccaaggtttagatatgtagatatggatttaataaatgaactgctcagatcaactctt
atcgaagcagaaatcactggttattcttcaagagcaaaaatcgagtatttgaagggcgag
ggatcgaagaagaggaaagcatataagatcctagtatatacagctgagcctataactagt
gataaattaaggatgttagaggaagaatataggaatagggttattcatcaaagaacacct
aagaggatcctgagacgtaaaaaagatactctcagaataagaagagtatacgaggtcaag
actaaattgttgcataataaactatttgaagcaatagtatattgcgatggaggcttatat
gttaaagaacttgtacacggagatgatggtagaactactcctagtttctcagatgtttta
ggtgtacaagcttatccattagagcttgatgtattcgttgttgagacaaaatag |