KEGG   Staphylothermus hellenicus: Shell_0072
Entry
Shell_0072        CDS       T01249                                 
Name
(GenBank) flap structure-specific endonuclease
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
shc  Staphylothermus hellenicus
Pathway
shc03030  DNA replication
shc03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:shc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Shell_0072
   03410 Base excision repair
    Shell_0072
   03450 Non-homologous end-joining
    Shell_0072
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:shc03032]
    Shell_0072
   03400 DNA repair and recombination proteins [BR:shc03400]
    Shell_0072
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:shc04147]
    Shell_0072
DNA replication proteins [BR:shc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    Shell_0072
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     Shell_0072
DNA repair and recombination proteins [BR:shc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Shell_0072
Exosome [BR:shc04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   Shell_0072
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc HHH_5 5_3_exonuc_N HHH_2
Other DBs
NCBI-ProteinID: ADI31221
UniProt: D7DAM4
LinkDB
Position
complement(60335..61387)
AA seq 350 aa
MGVNLKDLIPEEAKMVIEDLRMLRGRIVVIDGYNALYQFLTAIRQPDGTPLMDSQGRITS
HLSGLFYRTINILENGIKPAYVFDGKPPEIKAREIEKRRKIREDASKKYEEALRRGDVEA
ARRYAMMSAKLTDEMVHDAKKLLDAMGIPWIQAVAEGEAQAAYIVGKGDAWASASQDYDS
LLFGSPRLIRNLTISGRRKLPRKNVYIEIKPEIIELKKLLEKLGITREQLIYVALLIGTD
YNPDGVKGIGPKKALQLVKAYKTLDKILKAIPKTEFPVEPEKIVEYFLNPPVTTDYKLEW
KEPDESKIREILVEEHDFNPERVKNAVERLVKAYREHIRSKQMGLEAWFS
NT seq 1053 nt   +upstreamnt  +downstreamnt
ttgggagttaatctcaaagatttaattcctgaagaagcaaagatggtcatagaagatcta
aggatgcttagaggaagaatagttgttattgatggctacaatgcattatatcagttctta
acagctattagacaaccagatggaacacctttaatggatagccaaggtagaataacaagt
catctaagcggattattctataggacaataaatattttagaaaacgggatcaagcccgca
tatgtcttcgatggaaaaccaccggaaataaaggctagagaaatagagaagcgtagaaaa
atacgtgaagatgcttctaaaaaatatgaagaagcacttagaagaggagatgttgaagcc
gcacgaagatatgctatgatgtctgcaaagttaacggatgaaatggtacatgatgctaag
aaattattagatgcaatgggtattccatggatacaagctgttgctgaaggagaggctcag
gcagcttatattgttggtaaaggcgatgcatgggctagtgcgtcacaagactatgacagc
ttattatttggatcaccgaggcttataagaaaccttacaatttctggtaggagaaaacta
cctaggaaaaacgtatacatagaaataaaacccgagattatagagttaaagaaactatta
gagaaactaggaataacaagagaacaactaatatacgtagctttactgatcggcacagac
tataatcccgacggtgtaaaaggtatagggcctaaaaaagctctccaactagtaaaagcc
tataaaacactggataaaatactcaaggcaataccgaaaacagaatttcccgtggaaccg
gagaaaatagttgaatacttcttaaaccctccagtaacaacagattataaactagaatgg
aaagagccggatgagtctaaaataagggagattctagtagaagaacatgatttcaacccg
gaaagagttaagaacgctgttgaaagacttgttaaagcttatcgcgaacatataagaagc
aagcagatgggattagaagcatggttttcctaa

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