Staphylothermus hellenicus: Shell_0074
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Entry
Shell_0074 CDS
T01249
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
shc
Staphylothermus hellenicus
Pathway
shc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
shc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Shell_0074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shc03019
]
Shell_0074
03009 Ribosome biogenesis [BR:
shc03009
]
Shell_0074
04131 Membrane trafficking [BR:
shc04131
]
Shell_0074
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shc04147
]
Shell_0074
Messenger RNA biogenesis [BR:
shc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Shell_0074
Ribosome biogenesis [BR:
shc03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Shell_0074
Membrane trafficking [BR:
shc04131
]
SNARE
SNARE associated proteins
Others
Shell_0074
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Shell_0074
Exosome [BR:
shc04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Shell_0074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
CDC48_2
AAA_5
TIP49
AAA_22
AAA_2
AAA_14
AAA_33
AAA_lid_PRS2_C
AAA_28
IstB_IS21
nSTAND3
RNA_helicase
AAA_24
Mg_chelatase
Sigma54_activat
NPHP3_N
AAA_18
Parvo_NS1
Vps4_C
ATPase
ATPase_2
DUF815
AAA_7
TsaE
AAA_25
PhoH
AAA_3
ABC_tran
AAA_17
NB-ARC
SLFN-g3_helicase
AAA_19
Zot
DUF3221
Motif
Other DBs
NCBI-ProteinID:
ADI31223
UniProt:
D7DAM6
LinkDB
All DBs
Position
complement(61759..63975)
Genome browser
AA seq
738 aa
AA seq
DB search
MSLSTSSNKPGKIKITLRVLESEPRDVGKGIARVDPAIMERYGIINGDILVVEGRKKTVI
RAVEGYEKDRGLGIIRLDKFSRQNAGVKIGDKVIVEKLDENEVRKAITVKLAPTKYYAPI
DPGTTGYIKNRLLNRPVLEEDLVVIQILGQTIPFKVILTKPKGPVIIKKNTNIIVLERPM
DHAVPRVTYEDIGGMKHIVQRVRELVELPLRHPELFRRLGIEPPKGILLYGPPGTGKTLL
AKAVANEAEAYFIAINGPEIISKFYGESEQRLREIFEQAKKNAPAIIFIDEIDAIAPKRD
EVMGEVERRVVAQLLALMDGLESRGDVIVIAATNRPNALDPALRRPGRFDREIEVPLPDK
QGRLEILQIHTRGMPLANDVDLNKLAEITHGYTGADIAALVKEAALHALRRYMPEIDLES
ETIPVEVLEKMEVRMEDFLAAYKEIVPSGLREIYVEVPEVSWDDIGGLNDVKQELRRAVE
WPMKYPEVFKRLGIKPPRGILLYGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGE
SEKAIREIFRKARLYAPAVIFFDEIDAIAPARGYAFDSRVTERIVSQLLTEMDGINRLNN
VVVIAATNRPDILDPALLRPGRFDKLIYVPPPDLNGRIEILKIHTRNMPLAKDVDLYEIA
RLTEGYSGADLEALVREAAMRALKENIEINKIYMRHFLEAINEVRPSITQDIVKLYEEWG
RKARQRLPREYLKPAMYT
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgagcttatcgacatcaagcaataaacccggcaaaataaaaattacgctaagagttctt
gagagtgaaccaagagatgtgggtaagggaatagcaagagttgatccagcaattatggag
agatatggaataataaacggtgacatcctagttgttgagggaagaaagaaaaccgttatt
agagctgttgagggatacgagaaagatcgtggactaggcattatcagactagacaaattc
tctaggcaaaacgcaggtgtaaagataggggacaaagtaatagttgagaagctagatgag
aacgaagttcggaaagcaataacggtcaaattagcccctacaaaatactatgcaccaata
gatccaggcacaactggatatattaaaaatagactactaaaccgtcccgtattagaagag
gacctagtagttatccaaatacttggacaaacaataccctttaaagtgatcttgacaaaa
cctaagggacccgtcataataaagaaaaacacaaacataatagtattagagagaccaatg
gatcacgcagttccaagagtaacatatgaagacattggaggcatgaaacacattgtgcaa
cgagtaagagaactagtagagctaccgctaagacacccagagctctttagaagactcgga
atagaaccgcctaagggaatcctattatatggtcctcctggaaccggtaagaccttgtta
gctaaagctgttgctaacgaagcagaagcatatttcatagcaatcaacggccccgaaata
ataagtaagttctatggcgaatcagagcagaggcttagagaaatatttgagcaagcaaag
aagaatgctccagcaataatattcatagacgaaatagatgctatagcccctaaaagagac
gaagttatgggagaagttgaacggagagttgtagcacagcttctagcattaatggatggt
cttgaaagccgaggagacgtaatagtaattgctgcaacaaataggcctaacgcattagac
ccagcactacggagaccgggaagatttgatagagaaatagaagttccattaccagataag
cagggaagattagaaatcctacaaatacatacacgtggaatgcctttagcaaatgatgtt
gacctaaataaattagcggaaataacacatggatacacaggagcagacatcgctgcgctg
gttaaggaagcagcactacacgcgcttagaagatatatgcccgaaatagacttagaaagc
gagactatccctgtagaagtcctcgagaaaatggaggttagaatggaggatttcctagca
gcatataaggaaatagtgcctagtggcctaagagaaatatatgttgaggtaccagaggtt
tcatgggacgatatcggtggtttaaacgatgttaaacaagaacttagaagagctgttgaa
tggcctatgaagtatccagaagtatttaagagacttggaataaaaccccctagaggaatc
ctattatatggtcctcccggtactggtaagaccttgttggctaaagctgttgctactgag
agcggcgcaaacttcatagcggtgagaggaccagaaatactaagcaaatgggtaggagaa
tcagaaaaagcgatcagggagatctttagaaaagcgagactctacgctcccgcagtaatt
ttcttcgacgaaatagatgctatagctccagctagaggatatgctttcgattcaagagtg
actgagagaatagttagtcagctattaactgaaatggatggaattaataggttgaacaac
gtagtagttattgctgcaacaaatagaccagacatcctcgatccagcactgcttagacca
ggtagatttgataagttaatatatgtgccaccacccgatctaaatggtagaatagaaatc
ttaaagatccatacacgtaatatgccgcttgccaaggatgtagacttatatgaaattgcc
aggctaactgaaggatatagtggtgccgacttagaagcattagttagagaagcagctatg
agagcattaaaggagaatatagaaattaacaaaatatacatgaggcatttcctagaagca
ataaatgaagtaagaccttcaattacacaggatattgtgaagctatatgaggaatgggga
agaaaggctaggcagagattgccaagagaatatttaaagcccgctatgtatacataa
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