Staphylothermus hellenicus: Shell_1344
Help
Entry
Shell_1344 CDS
T01249
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
shc
Staphylothermus hellenicus
Pathway
shc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
shc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Shell_1344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shc03019
]
Shell_1344
03009 Ribosome biogenesis [BR:
shc03009
]
Shell_1344
04131 Membrane trafficking [BR:
shc04131
]
Shell_1344
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shc04147
]
Shell_1344
Messenger RNA biogenesis [BR:
shc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Shell_1344
Ribosome biogenesis [BR:
shc03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Shell_1344
Membrane trafficking [BR:
shc04131
]
SNARE
SNARE associated proteins
Others
Shell_1344
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Shell_1344
Exosome [BR:
shc04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Shell_1344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
TIP49
AAA_33
AAA_2
AAA_5
AAA_22
Vps4_C
AAA_14
AAA_28
AAA_18
nSTAND3
IstB_IS21
AAA_lid_PRS2_C
RNA_helicase
Mg_chelatase
NPHP3_N
TsaE
AAA_25
AAA_3
ABC_tran
ATPase
AAA_7
Zeta_toxin
Parvo_NS1
Molydop_binding
Sigma54_activat
AAA_24
DUF815
bpMoxR
PhoH
NACHT
AAA_17
AAA_11
SLFN-g3_helicase
ATPase_2
Bac_DnaA
AAA_6
KAP_NTPase
Motif
Other DBs
NCBI-ProteinID:
ADI32436
UniProt:
D7D9J0
LinkDB
All DBs
Position
complement(1296227..1298431)
Genome browser
AA seq
734 aa
AA seq
DB search
MPRNNNNREIRLRVAEARQRDVGRKIVRISRTDMARLGVVTGDFVEIIGPRGSIIAQVWP
AYPEDEDKDIIRMDGYLRRAIGASVGDIVSVKKTSVEPATKVVLAPTEPVRFGPDFVEYV
RQFLIRKPISRGEEIVIPIFGMSLKFIVIATQPGYRVYVTDETEIQIRSEPVKEEVIERA
RMIPKVTWEDIGDLEEAKQKIREIVELPLKHPELFKHLGIEPPKGILLHGPPGTGKTLLA
KALANEIGAYFTAINGPEIMSKFYGESEQRLREIFEEAERNAPAIIFIDEIDSIAPKREE
VTGEVEKRVVAQLLALMDGLKERGKVIVIGATNRPEALDPALRRPGRFDREIEIPPPDKR
ARREILAVHTRNMPLEEDVDLDKIAEMTHGYTGADLAALVKEAAMAALRRFIKEGKIDLT
QSIPAEKLRDLKVKMADFLEAMKYVQPTLIREIYVEVPEVRWSDIGGLEDVKQQLREAVE
WPMKHPEVFEQMGIEAPKGILLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGE
SEKAIRQIFRRARQVAPAVVFFDEIDSIAPARGYRHDTSGVTDRIVNQLLTELDGIEPLR
KVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDFKARIEIFKVHTKKMPLAPDVDLEEL
ARRTEGYTGADIAAVCREAAILALREEFKVRPVEMKHFLEALKHVPPSLTGSDIERYERM
AKELKRMGGLPYRV
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgcctagaaataataataatagagagattagacttagagttgcggaagcgagacaaaga
gatgttggaagaaaaattgtcaggatcagtagaaccgatatggctaggctaggagttgtt
acaggagatttcgtggaaattattggtcctcgaggaagcattattgcacaggtttggcct
gcttatcccgaagatgaagataaagacataatacgtatggatggatatttacgcagggct
attggagctagtgttggagacatagttagcgttaagaaaacaagtgttgagccagcaact
aaagtagttctagcaccaacagaacctgtacgtttcggcccggatttcgttgaatatgtt
cgccaattcttaattagaaaaccaattagcagaggagaggaaatagtaattccaatattc
ggtatgagcctaaaattcatcgttatagctacacagcctggatacagagtatatgtaaca
gatgaaacagagatacagataagaagcgagcctgttaaggaggaagttattgaaagagct
agaatgatacctaaagtaacctgggaggatataggcgatctggaggaggctaagcaaaag
ataagggaaatagttgaattaccattaaaacatcctgagctattcaaacatctaggtata
gagcctccaaaaggcatcctactacatggtccgccaggtactggtaagacattactggct
aaagccttagctaacgagattggagcatactttacagcgattaacggccccgagataatg
agtaagttctatggtgaatcagagcagaggcttagggaaatatttgaagaagctgagaga
aatgctccagcaataatattcatagacgagatagatagtattgctcctaagagagaagaa
gttacaggtgaagtggagaaaagggttgtggcgcaactactagctttaatggatggtttg
aaagaacgtggaaaagtaatagttattggagcaaccaatagacctgaagcactagaccca
gcacttcgtagaccaggtaggtttgatcgagaaatagagattccgccgccggataagcgt
gctagaagagaaatactcgctgttcacacacgtaatatgcccttagaagaagatgttgat
ctagataagatcgctgaaatgactcatggatatacaggagcggatttagctgcactagtt
aaagaagcagcaatggctgcactgagaagattcattaaagaaggaaaaatagatctaaca
caatccattccagcagagaaacttagagatctaaaagttaaaatggctgacttccttgaa
gcaatgaaatatgtacaaccaacccttattagggaaatatatgtcgaagtcccagaggtt
agatggagcgatattggaggccttgaagacgtgaagcaacaattgagggaagctgttgag
tggcccatgaagcatcccgaagtatttgaacaaatgggtattgaagccccaaagggaata
ctcctgtttggccctcctggaaccggtaagactttgttggctaaagctgttgctactgag
agcggcgcaaactttatagcagttagaggaccagaaatactaagcaaatgggtaggagaa
tcagaaaaagcaattagacaaatatttagaagagcaagacaagttgctccagcagttgta
ttctttgatgaaatagactcgattgcgcctgctcgtggatataggcatgatacaagcggt
gtcacagatcgtatagtgaatcaattattaacagaacttgacggaatagaacctcttaga
aaagtagtagttatagctgcaacaaatagaccagacatcctcgatccagcactgcttaga
ccaggtagatttgataggttaatatatgttcctccaccggactttaaagcgagaatagaa
atatttaaagtacacacgaagaaaatgcctttagcacctgatgtagacttagaagaacta
gctagaagaactgaaggctatactggagcagatatagctgcagtttgtagagaagcagca
attcttgctttaagagaagaattcaaagtaagacctgttgaaatgaaacacttcctagaa
gcattgaaacacgtacctccaagcctgacaggatctgatatagaaagatatgagagaatg
gctaaggagctcaagagaatgggcggactaccatatcgggtttag
DBGET
integrated database retrieval system
