Staphylothermus hellenicus: Shell_1476
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Entry
Shell_1476 CDS
T01249
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
shc
Staphylothermus hellenicus
Brite
KEGG Orthology (KO) [BR:
shc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
shc03016
]
Shell_1476
Enzymes [BR:
shc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Shell_1476
Transfer RNA biogenesis [BR:
shc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Shell_1476
Prokaryotic type
tRNA splicing ligases
Shell_1476
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADI32564
UniProt:
D7D9W8
LinkDB
All DBs
Position
1409591..1411042
Genome browser
AA seq
483 aa
AA seq
DB search
MSHNVRLEKIGEYEWRIPKGFKKCMKTDAIIFADEYLLEKMRSDLTLVQAANVACLPGIQ
LNMYVMPDGHQGYGFPIGGVAGFDAETGVISPGGVGYDINCGVRVLRTDLDEEDVRPRLK
ELVNTLFRNVPSGVGATGKLRLSFAQLDEVLNRGVEWAVENGFGWPEDMEHIEERGSWKI
ADAGKVSRRAKRRGHNQLGTLGAGNHFLEVQVVDKIYDPEAAKAMGITHEGQVTVMIHTG
SRGLGHQVASDYLLIMERAMRKYGIRPPDRELASLPFKTPEAQEYFKAMAAAANFAWTNR
QIIMHWTRESFKQVFHRDPEDLGMKLIYDVAHNIAKIEEHIVDGKKYKVVVHRKGATRAF
PPGHPEIPKDYQSIGQPVLIPGSMGTASYILVGTKKGVRTWHSAPHGAGRWMSRGAAIRT
YRPERVVEELSRKGIMLRAATRRVISEEAPGAYKDVDRVVLVAHKVGIGKLVVRLRPMGV
VKG
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
ttgagccataatgttaggcttgaaaaaataggggaatatgagtggcgtatacctaaaggg
tttaaaaaatgtatgaagactgatgcaataatctttgctgatgagtacctgttagaaaag
atgagatctgatctcacgcttgttcaagcagcaaatgtcgcttgcctacctggtatacag
ttaaacatgtatgtaatgccagatggccatcaaggctatgggttccccataggtggagta
gcggggttcgatgctgaaacaggagttattagtccgggaggagtaggttatgatataaac
tgtggagtaagagttctccgtactgatcttgacgaagaagatgtaagacctagattaaaa
gaactagtaaataccctcttcagaaacgttccaagcggtgttggtgcaactggtaaactc
agattaagctttgcccagttagatgaggtattaaaccgtggagtagaatgggctgtggaa
aatgggttcggctggccggaagacatggaacatatagaggagcggggaagctggaaaatc
gcagatgcaggcaaagttagtagaagagctaagcggagaggacataaccaactcggcact
ctaggcgcaggaaaccatttcttagaagtacaagtggtagataaaatatatgatcccgaa
gcagctaaggctatgggaataactcatgaaggacaagttacagtaatgattcatacaggc
agtcgtggattagggcatcaagtagcaagtgattacttgttaataatggagagagcaatg
cgaaaatacggtataagacctccggacagagaattagcaagcttaccgttcaaaacaccg
gaagcacaagaatattttaaagctatggctgctgctgcaaactttgcatggacaaataga
caaataataatgcattggacacgtgaaagctttaaacaagtattccatagggatccagaa
gatcttggaatgaagctaatatatgatgtagcacacaatattgcaaaaatagaagagcac
atagtagatggtaaaaaatacaaagttgtagttcatcgtaaaggagctacaagagcattc
ccgccgggacaccccgaaataccaaaagattatcaaagcatagggcaacccgtactaatt
cctggaagcatgggaacagcaagctatatcctagttggtacaaagaaaggagttagaaca
tggcatagtgcaccacatggtgcagggagatggatgagccgtggagcagctattaggaca
tatcgtcctgaacgagtagtggaagaattatcgagaaaaggcattatgttacgagcagcg
acgaggagagttataagcgaagaagccccaggtgcttataaagatgttgatagagtagtg
cttgtagcccataaagtgggcataggtaaactagttgttaggctgaggcctatgggggtt
gtaaagggctag
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