Staphylothermus hellenicus: Shell_1611
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Entry
Shell_1611 CDS
T01249
Name
(GenBank) K-like, type 1, subgroup
KO
K03679
exosome complex component RRP4
Organism
shc
Staphylothermus hellenicus
Pathway
shc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shell_1611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shc03019
]
Shell_1611
Messenger RNA biogenesis [BR:
shc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Shell_1611
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Shell_1611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
KH_1
RRP40_S1
RRP4_S1
KH_2
ECR1_N
KH-I_KHDC4-BBP
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ADI32698
UniProt:
D7DAA2
LinkDB
All DBs
Position
complement(1533449..1534171)
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AA seq
240 aa
AA seq
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MDLKILVADRQIVRPGDILAIIENSGEATPKYLPEKHVYIAENRIYSDVLGIVSITDKTV
SVIPLEGVYFPKKDDLVIGLVTGVGITNWIIDIRAPYKAILNGSEVIEGFNPIIHNLRDY
LDIGEYILAKISVFDRTRDPILTIKGKGLGKITEGTVIEVKPSRVPRIIGKKGSMLNLLT
SKTGCNIVVAQNGMIWARCPDNHRLNILIQALKIIEDKVHMRGLTEEIRLFLDKSLGEEG
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atggatctaaaaatacttgttgcagatcggcagatagtgagacctggcgacatacttgcc
ataattgaaaatagtggagaagccactcctaaatacctacctgaaaaacatgtttatatt
gcagaaaacaggatctactcagatgttcttggaatagtatcaataaccgataaaactgtt
tccgtaattccacttgaaggtgtttattttcctaaaaaagacgatttagtaataggacta
gttaccggagtaggtataacaaactggataatagatatacgagcaccatataaagccata
cttaacggctcggaagttattgaaggattcaatccaatcatacataatcttagagattac
ctggatataggcgaatatattctggcgaaaatctctgtatttgatagaacaagagacccg
atcctaacaattaaaggtaagggtttaggcaaaatcaccgagggaacagtaatagaggtt
aaaccaagccgtgtcccaagaataataggcaagaaaggaagcatgttgaacttactaaca
agtaagactggatgcaatattgttgttgcccaaaacggcatgatatgggctagatgccca
gataatcatcgcttaaatattcttatccaagccctaaaaattatagaggacaaggttcat
atgcgtggattaaccgaggaaataaggctttttctagataaatctcttggagaagaggga
tga
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