Sulfuritalea hydrogenivorans: SUTH_00111
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Entry
SUTH_00111 CDS
T03591
Name
(GenBank) helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
shd
Sulfuritalea hydrogenivorans
Pathway
shd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SUTH_00111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shd03019
]
SUTH_00111
Enzymes [BR:
shd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SUTH_00111
Messenger RNA biogenesis [BR:
shd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SUTH_00111
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BAO27931
UniProt:
W0SAB5
LinkDB
All DBs
Position
116114..117439
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AA seq
441 aa
AA seq
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MQFSELGLSAELLRAVGEQGYTTPTPVQQQAIPHILAGRDLEALAQTGTGKTAAFVLPIL
QRLTAAAASPLQKVTHTAPRVLVLVPTRELAAQVLESVRTYGAHTGLRSLAVFGGVGINP
QIQTMRRGIDILVATPGRLLDHLGQRTVDLSKVQMLVLDEADRMFDMGFIRDIRRIIERL
PKERQNLMFSATFAAEVRELAHTVLRNPAMVEVARRNAPAELVTHTVIKVDQDRKRDLLL
HLFAAHGWHQVLVFCRTKHGSDALARKLEQAGVRTAALHGNKSQNARTRALADFKSGKLA
ALVATDIAARGLDIDSLPRVVNFELPNVPEDYIHRIGRTGRAGASGEALSLVSSDERIQL
RDIERLLKREIETSILPGFEPQHNHSVPRPAAGRTPAAKPAQGRSRTGAGNRSGAPRPAR
SGGGGGGGAKPASHHSGQRHR
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgcagttttccgaactcggcctgtcggccgagctcctgcgcgccgttggcgagcagggc
tacaccacgcccacccctgtccagcaacaggccatcccccacatcctcgccggccgcgat
ctcgaagccctggcccagaccggaaccggcaagaccgccgccttcgtgctgccgatcctg
caacgcttgaccgctgccgcggccagtccgctgcagaaagtcacccacaccgcaccgcgc
gtgctggtgctggtgcccacgcgcgagctcgccgcgcaggtgctggaaagcgtgcgcacc
tatggcgcccacaccggcctgcgcagcctcgccgtgttcggcggggtcggcatcaacccg
cagatccagaccatgcgccgcggcatcgacatcctggtcgccacccccggccgcctgctc
gaccacctcggccagcgcaccgtcgacctctcgaaggtgcagatgctggtgcttgacgaa
gccgaccgcatgttcgacatgggcttcatccgcgacatccgccgcatcatcgagcgcctg
ccgaaggaacggcagaacctgatgttctccgccacctttgccgccgaggtgcgcgaactt
gcccacaccgtgctgcgcaatccggccatggtcgaagtcgcccgccgcaatgcgccggcc
gaactggtgacgcacacggtgatcaaggtcgaccaggacaggaagcgcgatctgctgttg
cacttgttcgccgcccacggctggcatcaggtgctggtgttctgccgcaccaagcacggc
tccgacgcgctggcgaggaagcttgaacaagccggcgttcgcaccgcggccctgcacggc
aacaagtcgcagaatgcccgtacccgcgccctggccgacttcaagtcgggcaagctggcg
gcgctggtcgccaccgacatcgccgcgcgcggcctcgacatcgattccctgccgcgcgtg
gtgaatttcgaactgcccaacgtgccggaagactacatccaccgcatcggccgcaccggc
cgagctggcgccagtggcgaagcgctcagtctcgtgagcagcgacgagcgcatccagctg
cgcgacatcgagcgcctgttgaaacgcgagatcgaaacctcgatcctccccggtttcgag
ccgcagcacaaccactcggtgccgcgtcccgccgccggccgcacaccggcggccaagccg
gcccagggccgctcgcgcacgggtgcggggaaccgcagcggcgcgccgcgtccggcccgt
tcgggcggtggtggcgggggcggcgccaagccggccagccatcacagcggccagcggcac
cgctga
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